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HALO® Module

Branch Structure

The Branch Structure module performs analysis of branch-like structures such as retinal vessels. The module identifies vessels, performs structural analysis, and reports a variety of vascular metrics that are near-impossible to measure manually.

File formats supported by the HALO image analysis platform:

  • Non-proprietary (JPG, TIF, OME.TIFF)
  • Nikon (ND2)
  • 3D Histech (MRXS)
  • Akoya (QPTIFF, component TIFF)
  • Olympus / Evident (VSI)
  • Hamamatsu (NDPI, NDPIS)
  • Aperio (SVS, AFI)
  • Zeiss (CZI)
  • Leica (SCN, LIF)
  • Ventana (BIF)
  • Philips (iSyntax, i2Syntax)
  • KFBIO (KFB, KFBF)
  • DICOM (DCM*)
    *whole-slide images

Related HALO Modules

Object Colocalization

Count one or two objects and measure the object area, diameter, stain intensity, and colocalization (where applicable). Microvessel and amyloid plaque quantification are most common applications.

Learn More
Microglial Activation

Quantify microglial activation based on length and thickness of microglial processes.

Learn More
Branch Structure FL

Analyze branch-like structures such as retinal vessels or cortical neurons in fluorescence.

Learn More

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