Simultaneously analyze up to five IHC stains in any cellular compartment (nucleus, cytoplasm, and/or membrane) with the HALO® Multiplex IHC module. This module is ideally suited for applications in immuno-oncology where multiple markers are required to characterize distinct immune and tumor cell populations within the tissue. Optimize your image analysis with available pre-trained AI-based membrane and/or nuclear segmentation, use threshold assistance features to set data-driven positivity thresholds, and define cell types of interest with the streamlined phenotype editor. Once optimized, leverage interactive markups to dynamically explore colocalization and combined cell phenotypes.
File formats supported by the HALO image analysis platform:
- Non-proprietary (JPG, TIF, OME.TIFF)
- Nikon (ND2)
- 3D Histech (MRXS)
- Akoya (QPTIFF, component TIFF)
- Olympus / Evident (VSI)
- Hamamatsu (NDPI, NDPIS)
- Aperio (SVS, AFI)
- Zeiss (CZI)
- Leica (SCN, LIF)
- Ventana (BIF)
- Philips (iSyntax, i2Syntax)
- KFBIO (KFB, KFBF)
- DICOM (DCM*)
*whole-slide images
Glomeruli Quantification and Characterization Application Note
Don’t let varied stain selections hold back your digital image analysis of kidney sections! With HALO AI you can develop a tissue classifier that accurately detects and segments glomeruli in sections across a range of stains including H&E, trichrome, PAMS, and DAB with hematoxylin.
Quantitative Multiplex Chromogenic Image Analysis Guide
From stain and chromogen selection to honing nuclear and membrane detection in HALO, this comprehensive guide provides best practices and optimization techniques to help take your multiplex chromogenic image analysis to the next level.
HALO AI High Impact Publications
Review this selection of high-impact publications for examples of HALO AI applications in fields ranging from metabolism to immuno-oncology and myology.
Interactive Markup Images: Providing a Dynamic Look at HALO® Analysis Results
At Indica Labs, our HALO platforms are optimized for ease-of-use as well as powerful, accurate analysis, and include multiple features to help users get the
HALO®, HALO AI, and HALO Link 3.6 Features and Functionalities
In this blog post, you can learn about some of the new features in these modules, where to find the user guides, tutorial videos, and
Getting Started with Brightfield Image Analysis in HALO®
3 April 2025 | Join us for an introductory webinar on brightfield image analysis in HALO®, designed for beginners. We’ll walk through key digital pathology
Masterclass Webinar 2: Advanced Techniques and Workflows for Multiplex IHC Analysis using HALO® and HALO AI
25 May 2023 | Following up on our Masterclass Webinar 1 for Multiplex IHC analysis, Masterclass 2 will discuss advanced workflows to help users tackle
Masterclass Webinar: Optimizing a 3-plex Multiplex IHC Assay Using Roche Discovery Reagents and HALO® Image Analysis
11 May 2023 | In this 60-minute webinar, we discuss best practices and optimization techniques for advanced quantitative multiplex immunohistochemical (mIHC) image analysis.
Maximizing use of HALO® and HALO AI for a comprehensive image analysis for HUMAN Brain FFPE Tissue samples in Alzheimer’s Disease
25 May 2022 | In this 60-min webinar, Learn how HALO and HALO AI are advancing neuropathology research at the UW Medicine Biorepository and Integrated
Indica Labs Announces Launch of High Dimensional Analysis Module for the HALO® Image Analysis Platform
Albuquerque, NM, 8 April 2025 – Indica Labs today announces the launch of the High Dimensional Analysis module for the HALO® image analysis platform. This
Publication Spotlight
The table below includes publications that cite the Multiplex IHC module.
Your publication not on the list? Drop us an email to let us know about it!
| Title | Authors | Year | Journal | Application | HALO Modules | Product |
|---|---|---|---|---|---|---|
| Evaluation of Early Markers of Ischemia-reperfusion Injury and Preservation Solutions in a Modified Hindlimb Model of Vascularized Composite Allotransplantation | Rostami S, Xu M, Datta S, Haykal S | 2022 | Transplantation Direct | Cytonuclear, Multiplex IHC | HALO | |
| Landscape of cancer-associated fibroblasts identifies the secreted biglycan as a protumor and immunosuppressive factor in triple-negative breast cancer | Zheng S, Zou Y, Tang Y, Yang A, Liang J, Wu L, Tian W, Xiao W, Xie X, Yang L, Xie J, Wei W, Xie X | 2022 | OncoImmunology | Immuno-oncology | Cytonuclear, Multiplex IHC | HALO |
| Postmortem high-dimensional immune profiling of severe COVID-19 patients reveals distinct patterns of immunosuppression and immunoactivation | Wu H, He P, Ren Y, Xiao S, Wang W, Liu Z, Li H, Wang Z, Zhang D, Cai J, Zhou X, Jiang D, Fei X, Zhao L, Zhang H, Liu Z, Chen R, Li W, Wang C, Zhang S, Qin J, Nasan B, Sun C | 2022 | Nature Communications | Infectious Disease | Multiplex IHC | HALO |
| Transcription factor Mesenchyme Homeobox Protein 2 (MEOX2) modulates nociceptor function | Kokotovic T, Lenartowicz E, Langeslag M, Ciotu C, Fell C, Scaramuzza A, Fischer M, Kress M, Penninger J, Nagy V | 2022 | The FEBS Journal | Neruoscience | Multiplex IHC | HALO |
| Collaborative workflow between pathologists and deep learning for evaluation of tumor cellularity in lung adenocarcinoma | Sakamoto T, Furukawa T, Pham H, Kuroda K, Tabata K, Kshima Y, Okoshi E, Morimoti S, Bychkov A, Fukuoka J | 2022 | bioRxiv | Oncology | Cytonuclear, Multiplex IHC | HALO AI |
| African-Ancestry Associated Gene Expression Signatures and Pathways in Triple Negative Breast Cancer, a Comparison across Women of African Descent | Martini R, Delpe P, Chu T, Arora K, Lord B, Verma A, Chen Y, Gebregzabher, Oppong J, Adjei E, Jibril A, Awuah B, Bekele M, Abebe E, Kyei I, Aitpillah F, Adinku M, Ankomah K, Osei-Bonsu E, Chitale D, Bensenhaver J, Nathanson S, Jackson L, Jiagge E, Petersen L, Proctor E, Gyan K, Gibbs L, Monojlovic Z, Kittles R, White J, Yates C, Manne U, Gardner K, Mongan N, Cheng E, Ginter P, Hoda S, Elemento O, Robine N, Sboner A, Carpten J, Newman L, Davis M | 2022 | medRxiv | Oncology | Multiplex IHC, Serial Section | HALO |
| A selective and orally bioavailable VHL-recruiting PROTAC achieves SMARCA2 degradation in vivo | Kofink C, Trainor N, Mair B, Wrhrle S, Wurm M, Mischerikow N, Bader G, Rumpel K, Gerstberger T, Cui Y, Greb P, Garavel G, Scharnweber M, Fuchs J, Gremel G, Chette P, Hopf S, Budano N, Rinnenthal J, Gmaschitz G, Diers E, McLennan R, Roy M, Whitworth C, Vetma V, Mayer M, Koegl M, Ciulli A, Weinstabl H, Farnaby W | 2022 | Biological and Medicinal Chemistry | Classifier, Cytonuclear, Multiplex IHC | HALO | |
| Pathogenesis of follicular thymic hyperplasia associated with rheumatoid arthritis | Ohe R, Yang S, Yamashita D, Ichikawa C, Saito A, Kabasawa T, Utsunomiya A, Aung N, Urano Y, Kitaoka T, Suzuki K, Takahara D, Sasaki A, Takakubo Y, Takagi M, Yamakawa M, Futakuchi M | 2022 | Pathology International | Other | Cytonuclear, Multiplex IHC | HALO |
| Pancreas resident macrophage-induced fibrosis has divergent roles in pancreas inflammatory injury and PDAC | Baer J, Zuo C, Kang L, Alarcon de la Lastra A, Bocherding N, Knolhoff B, Bogner S, Zhu Y, Lewis M, Zhang N, Kim K, Fields R, Mills J, Ding L, Randolph G, DeNardo D | 2022 | bioRxiv | Fibrosis | Classifier, Area Quantification, Cytonuclear, Multiplex IHC, Highplex FL, Figure Maker | HALO |
| Nuclear expression of pSTAT3Tyr705†and pSTAT3Ser727†in the stromal compartment of localized hormone-naÔve prostate cancer | Marginean F, Hellsten R, Krzyanowska A, Bjartell A | 2022 | Pathology - Research and Practice | Oncology | Cytonuclear, Multiplex IHC, TMA | HALO |
| An Fc-inert PD-L1◊4-1BB bispecific antibody mediates potent anti-tumor immunity in mice by combining checkpoint inhibition and conditional 4-1BB co-stimulation | Muik A, Altintas I, Gieseke F, Schoedel K, Burm S, Toker A, Salcedo T, Verzijl, Eisel D, Grunwitz C, Kranz L, Vormehr M, Satijn D, Diken M, Kreiter S, Sasser K, Ahmadi T, Tureci O, Breij E, Jure-Kunkel M, Sahin U | 2022 | OncoImmunology | Immuno-oncology | Area Quantification, Immune, Multiplex IHC | HALO |
| Tertiary lymphoid structures critical for prognosis in endometrial cancer patients - a TransPORTEC study | Horeweg N, Workel, H, Loiero D, Church D, Vermij L, LÈon-Castillo A, Krog R, de Boer S, Nout R, Powel M, Mileshkin L, MacKay H, Leary A, Singh N, J¸rgenliemk-Schulz I, Creutzberg C, Koelzer V, Nijman H, Bosse T, Bruyn M | 2022 | Nature Communications | Oncology | Cytonuclear, Multiplex IHC, TMA | HALO, HALO AI |
| ZEB1 transcription factor promotes immune escape in melanoma | Plaschka M, Benboubker V, Grimont M, Berthet J, Tonon L, Lopez J, Le-Bouar M, Balme B, Tondeau G, de la Fouchardiere A, Larue L, Puisieux A, Grinberg-Bleyer Y, Bendriss-Vermare N, Dubois B, Caux C, Dalle S, Caramel J | 2022 | Journal for ImmunoTherapy of Cancer | Immuno-oncology | Cytonuclear, Multiplex IHC, Highplex FL | HALO |
| Malfunction of airway basal stem cells plays a crucial role in pathophysiology of tracheobronchopathia osteoplastica | Hong Y, Shan S, Gu Y, Huang H, Zhang Q, Han Y, Dong Y, Liu Z, Huang M, Ren T | 2022 | Nature Communications | Other | Cytonuclear, Multiplex IHC | HALO |
| Sulforaphane exhibits antiviral activity against pandemic SARS-CoV-2 and seasonal HCoV-OC43 coronaviruses in vitro and in mice | Ordonez A, Bullen C, Villabona-Rueda A, Thompson E, Turner M, Merino V, Yan Y, Kim J, Davis S, Komm O, Powell J, D'Alessio F, Yolken R, Jain S, Jones-Brando L | 2022 | Communications Biology | Infectious Disease | Area Quantification, Multiplex IHC | HALO |
| Interspatial Distribution of Tumor and Immune Cells in Correlation with PD-L1 in Molecular Subtypes of Gastric Cancers | Dislich B, Mertz K, Gloor B, Langer R | 2022 | Cancers | Immuno-oncology | Multiplex IHC, Spatial Analysis, Figure Maker | HALO |
| Ad26.COV2.S prevents upregulation of SARS-CoV-2 induced pathways of inflammation and thrombosis in hamsters and rhesus macaques | Aid M, Vidal S, Piedra-Mora C, Ducat S, Chan C, Bondoc S, Colarusso A, Starke C, Nekorchuk M, Busman-Sahay K, Estes J, Martinot A, Barouch D | 2022 | PLOS Pathogens | Infectious Disease | Area Quantification, Multiplex IHC | HALO, HALO AI |
| Organelle resolved proteomics reveals new chordoma cell surface markers required for proliferation and association with outcome | Khan S, Zuccato J, Ignatchenko V, Singh O, Govindarajan M, Waas M, Gao A, Zadeh G, Kislinger T | 2022 | Research Square | Oncology | Cytonuclear, Multiplex IHC | HALO |
| Immune cell subsets in interface cutaneous immune-related adverse events (cirAEs) associated with anti-PD-1 therapy resemble accute graft vs host disease more than licen planus | Cruz G, Kaunitz G, Stein J, Sander I, Hollmann T, Cottrell T, Taube J, Sunshine J | 2022 | Journal of Cutaneous Pathology | Immunology | Cytonuclear, Multiplex IHC | HALO |
| Therapeutic impact of BET inhibitor BI 894999 treatment: backtranslation from the clinic | Tontsch-Grunt U, Traexler P, Baum A, Musa H, Marzin K, Wang S, Trapani F, Engelhardt H, Solca F | 2022 | British Journal of Cancer | Oncology | Classifier, Cytonuclear, Multiplex IHC | HALO |
| Immune and epithelial determinants of age-related risk and alveolar injury in fatal COVID-19 | Chait M, Yilmaz M, Shakil S, Ku A, Dogra P, Connors T, Szabo P, Gray J, Wells S, Kubota M, Matsumoto R, Poon M, Snyder M, Baldwin M, Sims P, Saqi A, Farber D, Weisberg S | 2022 | JCI Insight | Infectious Disease | Multiplex IHC | HALO |
| Hyperpolarized 13C-Pyruvate Metabolism as a Surrogate for Tumor Grade and Poor Outcome in Renal Cell CarcinomaóA Proof of Principle Study | Ursprung S, Woitek R, McLean M, Priest A, Crispin-Ortuzar M, Brodie C, Gill A, Gehrung M, Beer L, Riddick A, Field-Rayner J, Grist J, Deen S, Riemer F, Kaggie J, Zaccagna F, Duarte J, Locke M, Frary A, Aho T, Armitage J, Casey R, Mendichovszky I, Welsh S, Barrett T, Graves M, Eisen T, Mitchell T, Warren A, Brindle K, Sala E, Stewart G, Gallagher F | 2022 | Cancers | Oncology | Area Quantification, Cytonuclear, Multiplex IHC | HALO |
| C57BL/6J Mice Are Not Suitable for Modeling Severe SARS-CoV-2 Beta and Gamma Variant Infection | Currey J, Rabito F, Maness N, Blair R, Rappaport J, Qin X, Kolls J, Srivastava A | 2022 | Viruses | Infectious Disease | Cytonuclear, Multiplex IHC | HALO |
| Type I interferon regulates proteolysis by macrophages to prevent immunopathology following viral infection | Lee A, Feng E, Chew M, Balint E, Poznanski S, Giles E, Zhang A, Marzok A, Revill S, Vahedi F, Dubey A, Ayaub E, Jimenez-Saiz R, McGrath J, Ritchie T, Jordana M, Jonigk D, Ackermann M, Ask K, Miller M, Richards C, Ashkar A | 2022 | PLOS Pathogens | Infectious Disease | Area Quantification, Multiplex IHC, TMA | HALO |
| Dietary Pharmacological Zinc and Copper Enhances Voluntary Feed Intake of Nursery Pigs | DeMille C, Burrough E, Kerr B, Schweer W, Gabler N | 2022 | Frontiers in Animal Science | Other | Cytonuclear, Multiplex IHC | HALO |
| Spatial transcriptome of a germinal center plasmablastic burst hints at†MYD88/CD79B†mutants-enriched diffuse large B-cell lymphomas | L'Imperio V, Morello G, Vegliante M, Cancila V, Bertolazzi G, Mazzara S, Belmonte B, Mangogna A, Balzarini P, Corral L, Lopez G, Di Napoli A, Facchetti F, Pagni F, Tripodo C | 2022 | European Journal of Immunology | Oncology | Cytonuclear, Multiplex IHC | HALO |
| Multi-scale integrative analyses identify THBS2+†cancer-associated fibroblasts as a key orchestrator promoting aggressiveness in early-stage lung adenocarcinoma | Yang H, Sun B, Fan L, Ma W, Xu K, Hall S, Wang Z, Schmid R, Peng R, Marti T, Gao W, Xu J, Yang W, Yao F | 2022 | Theranostics | Oncology | Cytonuclear, Multiplex IHC | HALO |
| Maternal Western-Style Diet Impairs Bone Marrow Development and Drives a Hyperinflammatory Phenotype in Hematopoietic Stem and Progenitor Cells in Fetal Rhesus Macaques | Sureshchandra S, Chan C, Robino J, Parmelee L, Nash M, Wesolowski S, Pietras E, Friedman J, Takahashi D, Shen W, Hennebold J, Goldman D, Packwood W, Lindner J,Roberts C, Burwitz B, Messaoudi I, Varlamov O | 2022 | bioRxiv | Metabolism | Multiplex IHC | HALO |
| Preclinical evaluation of†FAP?2286 for†fbroblast activation protein targeted radionuclide imaging and†therapy | Zboralski D, Hoehne A, Bredenbeck A, Schumann A, Nguyen M, Schneider E, Ungewiss J, Paschke M, Haase C, von Hacht J, Kwan T, Lin K, Lenore J, Harding T, Xiao J, Simmons A, Mohan A, Beindorff N, Reineke U, Smerling C, Osterkamp F | 2022 | European Journal of Nuclear Medicine and Molecular Imaging | Oncology | Cytonuclear, Multiplex IHC | HALO |
| Integrated†Analysis†Of†Immunotherapy†Treated†Clear†Cell†Renal†Cell†Carcinomas:†An†Exploratory†Study | Sobottka B, Nienhold R, Nowak M, Hench J, Haeuptle P, Frank A, Sachs M, Kahraman A, Moch H, Koelzer V, Mertz K | 2022 | Journal of Immunotherapy | Immuno-oncology | Cytonuclear, Multiplex IHC, Figure Maker | HALO, HALO AI |
| A lncRNA signature associated with tumor immune heterogeneity predicts distant metastasis in locoregionally advanced nasopharyngeal carcinoma | Liang Y, Zhang Y, Tan X, Qiao H, Liu S, Tang L, Mao Y, Chen L, Li W, Zhou G, Zhao Y, Li J, Li Q, Huang S, Gong S, Zheng Z, Li Z, Sun Y, Jiang W, Ma J, Li Y, Liu N | 2022 | Nature Communications | Immuno-oncology | Classifier, Multiplex IHC, Registration | HALO |
| Prenatal di-(2-ethylhexyl_ phthalate exposure induced myocardial cytotoxicity via the regulation of the NRG1-dependent ErbB2/ErbB4-PI3K/AKT signaling pathway in fetal mice | Yu D, Zhu D, Wang X, Li B, Li J, Lu P, Ji Y, Wang X | 2022 | Ecotoxicology and Environmental Safety | Other | Multiplex IHC | HALO |
| Effects of Extracorporeal Shockwave Therapy on Functional Recovery and Circulating miR-375 and miR-382-5p after Subacute and Chronic Spinal Cord Contusion Injury in Rats | Ashmwe M, Posa K, Ruhrnossl A, Heinzel J, Heimel P, Mock M, Schadl B, Keibl C, Couillard-Despres S, Redl H, Mittermayr R, Hercher D | 2022 | Biomedicines | Neuroscience, Other | Classifier, Multiplex IHC | HALO |
| Spatial meta-transcriptomics reveal associations of intratumor bacteria burden with lung cancer cells showing a distinct oncogenic signature | Wong-Rolle A, Dong Q, Zhu Y, Divakar P, Hor J, Kedei N, Wong M, Tillo D, Conner E, Rajan A, Schrump D, Jim C, Germain R, Zhao C | 2022 | Journal for ImmunoTherapy of Cancer | Immuno-oncology | Cytonuclear, Multiplex IHC | HALO |
| SOX9+ malignant cells define a poor prognosis subtype of Glioma with tumor-associated macrophage recruitment | Yu S, Ma C, Wang H, Yu B, Luan Y, Xia Z | 2022 | Research Square | Immuno-oncology | Cytonuclear, Multiplex IHC | HALO |
| The combination of gene hyperamplification and PD-L1 expression as a biomarker for the clinical benefit of tislelizumab in gastric/gastroesophageal junction adenocarcinoma | Lu Z, Yang S, Luo X, Shi Y, Lee J, Deva S, Liu T, Chao Y, Zhang Y, Huang R, Xu Y, Shen Z, Shen L | 2022 | Gastric Cancer | Immuno-oncology | Classifier, Multiplex IHC | HALO |
| Cancer-associated fibroblasts require proline synthesis by PYCR1 for the deposition of pro-tumorigenic extracellular matrix | Kay E, Paterson K, Riero-Domingo C, Sumpton D, Dabritz J, Tardito S, Boldrini C, Hernandez-Fernaud J, Athineos D, Dhayade S, Stepanova E, Gjerga E, Neilson L, Lilla S, Hedley A, Koulouras G, McGregor G, Jamieson C, Johnson R, Park M, Kirschner K, Miller C, Kamphorst J, Loayza-Puch F, Saez-Rodriguez J, Mazzone M, Blyth K, Zagnoni M, Zanivan S | 2022 | Nature Metabolism | Oncology, Metabolism | Cytonuclear, Multiplex IHC, Highplex FL | HALO |
| Discovery of†a†novel ALK/ROS1/FAK inhibitor, APG-2449, in†preclinical non-small cell lung cancer and†ovarian cancer models | Fang D, Tao R, Wang G, Li Y, Zhang K, Xu C, Zhai G, Wang Q, Wang J, Tang C, Min P, Xiong D, Chen J, Wang S, Yang D, Zhai Y | 2022 | BMC Cancer | Oncology | Multiplex IHC | HALO |
| Cell graph neural networks enable the precise prediction of patient survival in gastric cancer | Wang Y, Wang Y, Hu C, Li M, Fan Y, Otter N, Sam I, Gou H, Hu Y, Kwok T, Zalcberg J, Boussioutas A, Daly R, Montufar G, Lio P, Xu D, Webb G, Song J | 2022 | Precision Oncology | Oncology | Multiplex IHC | HALO |
| Spartalizumab or placebo in combination with dabrafenib and trametinib in patients with†BRAF†V600-mutant melanoma: exploratory biomarker analyses from a randomized phase 3 trial (COMBI-i) | Tawbi H, Robert C, Brase J, Gusenleitner D, Gasal E, Garrett J, Savchenko A, Gorgun G, Flaherty K, Ribas A, Dummer R, Schadendorf D, Long G, Nathan P, Ascierto P | 2022 | Journal for ImmunoTherapy of Cancer | Oncology | Multiplex IHC, Spatial Analysis | HALO |
| Approaches to spatially resolving the tumour immune microenvironment of hepatocellular carcinoma | Marsh-Wakefield F, Ferguson A, Liu K, Santhakumar C, McCaughan G, Palendira U | 2022 | Therapeutic Advances in Medical Oncology | Review | Multiplex IHC, Spatial Analysis, Highplex FL | HALO |
| Intact HIV proviruses persist in the brain despite viral suppression with ART | Cochrane C, Angelovich T, Byrnes S, Waring E, Guanizo A, Trollope G, Zhou J, Vue J, Senior L, Wanicek E, Eddine J, Gartner M, Jenkins T, Gorry P, Brew B, Lewin S, Estes J, Roche M, Churchill M | 2022 | Annals of Neurology | Infectious Disease | Multiplex IHC | HALO |
| Radioprotective effect of X-ray abdominal FLASH irradiation: Adaptation to oxidative damage and inflammatory response may be benefiting factors | Zhu H, Xie D, Yang Y, Huang S, Gao X, Peng Y, Wang B, Wang J, Xiao D, Wu D, Li C, Li C, Qian C, Deng X | 2022 | Medical Physics | Oncology, Other | Multiplex IHC | HALO |
| Hyperpolarised†13C-MRI identifies the emergence of a glycolytic cell population within intermediate-risk human prostate cancer | Sushentsev N, McLean M, Warren A, Benjamin A, Brodie C, Frary A, Gill A, Jones J, Kaggie J, Lamb B, Locke M, Miller J, Mills I, Priest A, Robb F, Shah N, Schulte R, Graves M, Gnanapragasam V, Brindle K, Barrett T, Gallacher F | 2022 | Nature Communications | Oncology | ISH/FISH, Membrane, Multiplex IHC | HALO |
| DS-7300a, a DNA Topoisomerase I Inhibitor, DXd-based Antibody-Drug Conjugate 2 Targeting B7-H3 Exerts Potent Antitumor Activities in Preclinical Models | Yamato M, Hasegawa J, Maejima T, Hattori C, Kumagai K, Watanabe A, Nishiya Y, Shibutani T, Aida T, Hayakawa I, Nakada T, Abe Y, Agatsuma T | 2022 | Molecular Cancer Therapeutics | Oncology | Multiplex IHC | HALO |
| Prostate cancer androgen receptor activity dictates efficacy of Bipolar Androgen Therapy | Sena L, Kumar R, Sanin D, Thompson E, Rosen D, Dalrymple S, Antony L, Yang Y, Comes-Alexandre C, Hicks J, Jones T, Bowers K, Eskra J, Meyers J, Gupta A, Skaist A, Yegnasubramanian S, Luo J, Brennen W, Kachhap S, Antonarakis E, De Marzo A, Isaacs J, Markowski M, Denmeade S | 2022 | medRxiv | Oncology | Classifier, Cytonuclear, Multiplex IHC, Registration | HALO |
| Senescence-Associated Molecules and Tumor-Immune-Interactions as Prognostic Biomarkers in Colorectal Cancer | Kellers F, Fernandez A, Konykiewitz B, Schindeldecker M, Tagscherer K, Heintz A, Jesinghaus M, Roth W, Foersch S | 2022 | Frontiers in Medicine | Oncology | Classifier, Multiplex IHC, Spatial Analysis, Registration, TMA | HALO |
| Tau Pathology in Chronic Traumatic Encephalopathy is Primarily Neuronal | Butler M, Dixon E, Stein T, Alvarez V, Huber B, Buckland M, McKee A, Cherry J | 2022 | Journal of Neuropathology & Experimental Neurology | Neuroscience | Multiplex IHC, Spatial Analysis, Highplex FL | HALO, HALO AI |
| Chemoradiation-induced alteration of programmed death-ligand 1, CD8+ tumor-infiltrating lymphocytes and mucin expression in rectal cancer | Baretti M, Zhu Q, Fu W, Meyer J, Wang H, Anders R, Azad N | 2022 | Oncotarget | Oncology | Multiplex IHC, Spatial Analysis | HALO |
| Glycosphingolipids are mediators of cancer plasticity through independent signaling pathways | Cumin C, Huang Y, Rossdam C, Ruoff F, Cespedes S, Liang C, Lombardo F, Coelho R, Rimmer N, Konantz M, Lopez M, Alam S, Schmidt A, Calabrese D, Fedier A, Vlajnic T, Itzstein M, Templin M, Buettner F, Everest-Dass A, Heinzelmann-Schwarz V, Jacob F | 2022 | Cell reports | Oncology | Classifier, Multiplex IHC | HALO |
| Bright-Field Multiplex Immunohistochemistry Assay for Tumor Microenvironment Evaluation in Melanoma Tissues | Ugolini F, Pasqualini E, Simi S, Baroni G, Massi D | 2022 | Cancers | Other | Multiplex IHC | HALO, HALO Link |
| Knockdown of ZBTB11 impedes R-loop elimination and increases the sensitivity to cisplatin by inhibiting DDX1 transcription in bladder cancer | Chen L, Liu Z, Tang H, Zhou Z, Chen J, Ma Z, Deng M, Li X, Wu Y, Zheng L, Zhou L, Zheng X, Liu Z | 2022 | Cell Proliferation | Oncology | Multiplex IHC, Highplex FL, Figure Maker | HALO |
| Tumor-infiltrated activated B cells suppress liver metastasis of colorectal cancers | Xu Y, Wei Z, Feng M, Zhu D, Mei S, Wu Z, Feng Q, Chang W, Ji M, Liu C, Zhu Y, Shen L, Yang F, Chen Y, Feng Y, Xu J, Zhu D | 2022 | Cell Reports | Oncology, Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| Tumor immune contexture is a determinant of anti-CD19 CAR T cell efficacy in large B cell lymphoma | Scholler N, Perbost R, Locke F, Jain M, Turcan S, Danan C, Chang E, Neelapu S, Miklos D, Jacobson C, Lekakis L, Lin Y, Ghobadi A, Kim J, Chou J, Plaks V, Wang Z, Xue A, Mattie M, Rossi J, Bot A, Galon J | 2022 | Nature Medicine | Immuno-oncology | Multiplex IHC, Figure Maker | HALO |
| A Beta-containing bivalent SARS-CoV-2 spike protein vaccine candidate with AS03 elicits durable and broad neutralization of variants including Omicron in macaques and confers protection in hamsters | Berry C, Pavot V, Anosova N, Kishko M, Huang D, Tibbitts T, Raillard A, Gautheron S, Cummings S, Bangari D, Kar S, Atyeo C, Deng Y, Alter G, Gutzeit C, Koutsoukos M, Chicz R, Lecouturier V | 2022 | Research Square | Infectious Disease | Multiplex IHC | HALO |
| Immune cells in mesothelioma microenvironment simplistic marker of response to nivolumab plus ipilimumab | Disselhorst M, Lubeck Y, van der Noort V, Quispel-Janssen J, Seignette I, Sanders J, Peters D, Hooijberg E, Baas P | 2022 | Lung Cancer | Oncology | Multiplex IHC, Registration | HALO |
| In situ†mass spectrometry imaging reveals heterogeneous glycogen stores in human normal and cancerous tissues | Young L, Conroy L, Clarke H, Hawkinson T, Bolton K, Sanders W, Chang J, Webb M, Alilain W, Vander Kooi C, Drake R, Andrews D, Badgett T, Wagner L, Allison D, Sun R, Gentry M | 2022 | EMBO Molecular Medicine | Oncology, Metabolism | Multiplex IHC | HALO |
| Modelling aggressive prostate cancers of young men in immune-competent mice, driven by isogenic†Trp53†alterations and†Pten†loss | Mejia-Hernandez J, Keam S, Saleh R, Muntz F, Fox S, Byrne D, Kogan A, Pang L, Huynh J, Litchfield C, Caramia F, Lozano G, He H, You J, Sandhu S, Williams S, Haupt Y, Haupt S | 2022 | Cell Death & Disease | Oncology | Multiplex IHC, Highplex FL, Figure Maker | HALO |
| Integrated multi-omics analysis of adverse cardiac remodeling and metabolic inflexibility upon ErbB2 and ERR? deficiency | Dufour C, Xia H, B'chir W, Perry M, Kuzmanov U, Gainullina A, Dejgaard K, Scholtes C, Ouellet C, Zuo D, Sanguin-Gendreau V, Guluzian C, Smith H, Muller W, Audet-Walsh E, Sergushichev A, Emili A, Giguere V | 2022 | Communications Biology | Other | Multiplex IHC | HALO |
| Effects of hypoxia-preconditioned HucMSCs on neovascularization and follicle survival in frozen/thawed human ovarian cortex transplanted to immunodeficient mice | Cheng J, Ruan X, Li Y, Du J, Jin F, Gu M, Zhou Q, Xu X, Yang Y, Wang H, Mueck A | 2022 | Stem Cell Research & Therapy | Other | Multiplex IHC | HALO |
| STRIP2 motivates non-small cell lung cancer progression by modulating the TMBIM6 stability through IGF2BP3 dependent | Zhang X, Chen Q, He Y, Shi Q, Yin C, Xie Y, Yu H, Bao Y, Tang C, Dong Z | 2022 | Research Square | Oncology | Multiplex IHC | HALO |
| Integrated pathological analysis to develop a Gal-9 based immune survival stratification to predict the outcome of lung large cell neuroendocrine carcinoma and its usefulness in immunotherapy | Che Y, Luo Z, Cao Y, Wang J, Xue Q, Sun N, He J | 2022 | International Journal of Biological Sciences | Oncology | Classifier, Multiplex IHC | HALO |
| Dapagliflozin reduces the vulnerability of rats with pulmonary arterial hypertension-induced right heart failure to ventricular arrhythmia by restoring calcium handling | Wu J, Liu T, Shi S, Fan Z, Hiram R, Xiong F, Cui B, Su X, Chang R, Zhang W, Yan M, Tang Y, Huang H, Wu G, Guang C | 2022 | Cardiovascular Diabetology | Other | Multiplex IHC | HALO |
| The NALCN channel regulates metastasis and nonmalignant cell dissemination | Rahrmann E, Shorthouse D, Jassim A, Hu L, Ortiz M, Mahler-Araujo B, Vogel P, Paez-Ribes M, Fatemi A, Hannon G, Iyer R, Blundon J, Lourenco F, Kay J, Nazarian R, Hall B, Zakharenko S, Winton D, Zhu L, Gilbertson R | 2022 | Nature Genetics | Oncology | ISH/FISH, Multiplex IHC | HALO |
| The proteomic landscape of glioblastoma recurrence reveals novel and targetable immunoregulatory drivers | Tatari N, Khan S, Livingstone J, Zhai K, Mckenna D, Ignatchenko V, Chokshi C, Gwynne W, Singh M, Revill S, Mikolajewicz N, Zhu C, Chan J, Hawkins C, Lu J, Provias J, Ask K, Morrissy S, Brown S, Weiss T, Weller M, Han H, Greenspoon J, Moffat J, Venugopal C, Boutros P | 2022 | Acta Neuropathologica | Oncology | Multiplex IHC, Figure Maker, TMA | HALO |
| PD-L1 predicts chemotherapy resistance in large-cell neuroendocrine carcinoma | Che Y, Luo Z, Cao Y, Sun N, Xue Q, He J | 2022 | British Journal of Surgery | Oncology | Classifier, Multiplex IHC | HALO |
| Overcoming high level adenosine-mediated immunosuppression by DZD2269, a potent and selective A2aR antagonist | Bai Y, Zhang X, Zheng J, Liu Z, Yang Z, Zhang X | 2022 | Journal of Experimental & Clinical Cancer Research | Oncology | Multiplex IHC | HALO |
| Carbonic anhydrase 14 protects the liver against the cytotoxicity of bile acids in a biliary bicarbonate umbrella-related manner | Qian J, Shen Q, Zhang T, Chen J, Chen L, Dong Y, Yan R, Chen Z | 2022 | Life Sciences | Other | Multiplex IHC | HALO |
| Targeting breast and pancreatic cancer metastasis using a dual-cadherin antibody | Micalizzi D, Che D, Nicholson B, Edd J, Desai N, Lang E, Toner M, Maheswaran S, Ting D, Haber D | 2022 | Proceedings of the National Academy of Sciences | Oncology | Multiplex IHC, Highplex FL | HALO |
| Cystatin C is glucocorticoid-responsive, directs recruitment of Trem2+ macrophages and predicts failure of cancer immunotherapy | Kleeman S, Demestichas B, Mourikis N, Loiero D, Ferrer M, Bankier S, Riazat-Kesh Y, Lee H, Chantzichristos D, Regan C, Preall J, Sinha S, Rosin N, Yipp B, de Almeida L, Biernaskie J, Dufour A, Tober-Lau P, Ruusalepp A, Bjorkegren J, Ralser M, Kuth F, Demechev V, Heywood T, Gao Q, Johannsson G, Koelzer V, Walker B, Meyer H, Janowitz T | 2022 | medRxiv | Immuno-oncology | Multiplex IHC | HALO, HALO AI |
| Single-incision cochlear implantation and hearing evaluation in piglets and minipigs | Yildiz E, Gerlitz M, Gadenstaetter A, Landegger L, Nieratschker M, Schum D, Schmied M, Haase A, Kanz F, Kramer A, Glueckert R, Staecker H, Honeder C, Arnoldner C | 2022 | Hearing Research | Neuroscience | Multiplex IHC | HALO |
| The Neo-PLANET phase II trial of neoadjuvant camrelizumab plus concurrent chemoradiotherapy in locally advanced adenocarcinoma of stomach or gastroesophageal junction | Tang Z, Wang Y, Liu D, Wang X, Xu C, Yu Y, Cui Y, Tang C, Li Q, Sun J, Zhang Q, Ji Y, Ma G, Li H, Shen Z, Shen K, Zheng R, Hou Z, Liu T, Wang J, Sun Y | 2022 | Nature Communications | Immuno-oncology | Cytonuclear, Multiplex IHC | HALO |
| Assessment of spatial transcriptomics for oncology discovery | Lyubetskaya A, Rabe B, Fisher A, Lewin A, Neuhaus I, Brett C, Brett T, Pereira E, Golhar R, Kebede S, Font-Tello A, Mosure K, Wittenberghe N, Mavrakis K, Maclsaac K, Chen B, Drokhlyansky E | 2022 | Cell Reports Methods | Oncology | Cytonuclear, Multiplex IHC, Registration | HALO, HALO AI |
| Dynamin-2 deficiency causes age- and sex-dependent neutropenia and myelodysplasia in mice | Willis A, Corey S, Murga-Zamalloa C, Karimi S, Khaddour K, Quigley J, Eklund E, Chen Y | 2022 | Blood Advances | Other | Cytonuclear, Multiplex IHC | HALO |
| The association of HHLA2 and PD-L1 expression with prognosis and immune microenvironment in hepatocellular carcinoma | Wang C, Chen S, Yang X, Wu T, Liu L, Yun J | 2022 | Research Square | Oncology | Cytonuclear, Multiplex IHC | HALO |
| Presence of Tim3+ and PD-1+ CD8+ T cells identifies microsatellite stable colorectal carcinomas with immune exhaustion and distinct clinicopathological features | Klapholz M, Drage M, Srivastava A, Anderson A | 2022 | The Journal of Pathology | Oncology | Multiplex IHC, Highplex FL | HALO |
| Evaluating changes in GABAergic and glutamatergic pathways in early life following prenatal stress and postnatal neurosteroid supplementation | Crombie G, Palliser H, Shaw J, Hodgson D, Walkder D, Hirst J | 2022 | Psychoneuroendocrinology | Neuroscience | Multiplex IHC | HALO |
| Impact of HPV status on immune responses in head and neck squamous cell carcinoma | Qureshi H, Zhu X, Yang G, Steadele M, Pierce R, Futran N, Lee S, Mendez E, Houghton A | 2022 | Oral Oncology | Oncology | Multiplex IHC, Spatial Analysis, Highplex FL | HALO |
| Murine fecal microbiota transfer models selectively colonize human microbes and reveal transcriptional programs associated with response to neoadjuvant checkpoint inhibitors | Shaikh F, Gills J, Mohammad F, White J, Stevens C, Ding H, Fu J, Tam A, Blosser R, Domingue J, Larman T, Chaft J, Spicer J, Reuss J, Naidoo J, Forde P, Ganguly S, Housseau F, Pardoll D, Sears C | 2022 | Cancer Immunology, Immunotherapy | Immuno-oncology | Multiplex IHC | HALO |
| Association between mitochondrial and nuclear DNA damages and cellular senescence in the patients with biliary atresia undergoing Kasai portoenterostomy and liver transplantation | Nakajima Y, Yamazaki Y, Gao X, Hashimoto M, Nio M, Wada M, Fujishima F, Sasano H | 2022 | Medical Molecular Morphology | Gastroenterology | Multiplex IHC | HALO |
| Bone quality and composition are influenced by egg production, layer line, and estradiol-17ß in laying hens | Eusemann B, Ulrich R, Sacnhez-Rodriquez E, Benavides-Reyes C, Dominguez-Gasca, Rodriguez-Navarro A, Petow S | 2022 | Avian Pathology | Other | Classifier, Multiplex IHC | HALO |
| Activation of Drp1 promotes fatty acids-induced metabolic reprograming to potentiate Wnt signaling in colon cancer | Xiong X, Hasani S, Young L, Rivas D, Skaggs A, Martinez R, Wang C, Weiss H, Gentry M, Sun R, Gao T | 2022 | Cell Death & Differentiation | Oncology | Multiplex IHC | HALO |
| Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer | Rajurkar M, Parikh A, Solovyov A, You E, Kulkarni A, Chu C, Xu K, Jaicks C, Taylor M, Wu C, Alexander K, Good C, Szabolcs A, Gerstberger S, Tran A, Xu N, Ebright R, Van Seventer E, Vo K, Tai E, Lu C, Joseph-Chazan J, Raabe M, Nieman L, Desai N, Arora K, Ligorio M, Thapar V, Cohen L, Garden P, Senussi Y, Zheng H, Allen J, Blaszkowsky L, Clark J, Goyal L, Wo J, Ryan D, Cocoran R, Deshpande V, Rivera M, Aryee M, Hong T, Berger S, WAlt D, Burns K, Park P, Greenbaum B, Ting D | 2022 | Cancer Discovery | Oncology | Area Quantification, Multiplex IHC | HALO |
| The FUS::DDIT3 fusion oncoprotein inhibits BAF complex targeting and activity in myxoid liposarcoma | Zullow H, Sankar A, Ingram D, Guerra D, D'Avino A, Collings C, Lazcano R, Wang W, Liang Y, Qi J, Lazar A, Kadoch C | 2022 | Molecular Cell | Oncology | Multiplex IHC | HALO |
| Unchecked oxidative stress in skeletal muscle prevents outgrowth of disseminated tumour cells | Crist S, Nemkov T, Dumpit R, Dai J, Tapscott S, True L, Swarbrick A, Sullivan L, Nelson P, Hansen K, Ghajar C | 2022 | Nature Cell Biology | Myology | Multiplex IHC, Registration | HALO |
| In vitro cell cultures of Brunner's glands from male mouse to study GLP-1 receptor function | Voetmann L, Underwood C, Rolin B, Hansen A, Kirk R, Pyke C, Knudsen L, Frederiksen K | 2022 | Methods in Cell Physiology | Gastroenterology | Multiplex IHC | HALO |
| Reduced SARS-CoV-2 disease outcomes in Syrian hamsters receiving immune sera: Quantitative image analysis in pathologic assessments | Pieda-Mora C, Robinson S, Tostanoski L, Dayao D, Chandrashekar A, Bauer K, Wrijil L, Ducat S, Hayes T, Yu J, Bondzie E, McMahan K, Sellers D, Giffin V, Hope D, Nampanya F, Mercado N, Kar S, Andersen H, Tzipori S, Barouch D, Martinot A | 2022 | Veterinary Pathology | Infectious Disease, Other | Classifier, Multiplex IHC | HALO |
| Aberrant inflammation in rat pregnancy leads to cardiometabolic alterations in their offspring and intrauterine growth restriction in the F2 generation | Ushida T, Cotechini T, Protopapas N, Atallah A, Collyer C, Toews A, Maconald-Goodfellow S, Tse M, Winn L, Pang S, Adams M, Othman M, Kotani T, Kajiyama H, Graham C | 2022 | Journal of Developmental Origins of Health and Disease | Metabolism, Other | Multiplex IHC | HALO |
| High-strength biodegradable zinc alloy implants with antibacterial and osteogenic properties for the treatment of MRSA-induced rat osteomyelitis | Jia B, Zhang Z, Zhuang Y, Yang H, Han Y, Wu Q, Jia X, Yin Y, Qu X, Zheng Y, Dai K | 2022 | Biomaterials | Biomaterials | Multiplex IHC | HALO |
| Escherichia coli-specific CXCL13-producing TFH are associated with clinical efficacy of neoadjuvant PD-1 blockade against muscle-invasive bladder cancer | Goubet A, Lordello L, Silva C, Peguillet I, Gazzano M, Mbogning-Fonkou M, Thelemaque C, Lebacle C, Thibault C, Audenet F, Pignot G, Gravis G, Helissey C, Campbedel L, Roupret M, Xylinas E, Ouzaid I, Dubuisson A, Mazzenga M, Flament C, Ly P, Marty V, Signolle N, Sauvat A, Sbarrato T, Filahi M, Davin C, Haddad G, Khalil J, Bleriot C, Danlos F, Dunsmore G, Mulder K, Silvin A, Raoult T, Archambaud B, Belhechmi S, Boneca I, Cayet N, Moya-Nilges M, Mallet A, Daillere R, Rouleau E, Radulescu C, Allory Y, Fieschi J, Rouanne M, Ginhoux F, Le Teuff G, Derosa L, Marabelle A, Van Dorp J, Van Dijk N, van der Heijden M, Besse B, Andre F, Merad M, Kroemer G, Scoazec J, Zitvogel L, Loriot Y | 2022 | Cancer Discovery | Oncology | Multiplex IHC, Spatial Analysis | HALO |
| Integrative Analysis of Bioinformatics and Machine Learning Algorithms Identifies a Novel Diagnostic Model Based on Costimulatory Molecule for Predicting Immune Microenvironment Status in Lung Adenocarcinoma | Zhai W, Duan F, Wang Y, Wang J, Zhao Z, Lin Y, Rao B, Chen S, Zheng L, Long H | 2022 | The American Journal of Pathology | Oncology | Classifier, Multiplex IHC | HALO |
| Localization of macrophage subtypes and neutrophils in the prostate tumor microenvironment and their association with prostate cancer racial disparities | Maynard J, Godwin T, Lu J, Vidal I, Lotan T, De Marzo A, Joshu C, Sfanos K | 2022 | The Prostate | Oncology | ISH/FISH, Multiplex IHC | HALO |
| Upfront FOLFOXIRI plus bevacizumab with or without atezolizumab in the treatment of patients with metastatic colorectal cancer (AtezoTRIBE): a multicentre, open-label, randomised, controlled, phase 2 trial | Antoniotti C, Rossini D, Pietrantonio F, Catteau A, Salvatore L, Lonardi S, Boquet I, Tamberi S, Marmorino F, Moretto R, Ambrosini M, Tamburini E, Tortora G, Passardi A, Bergamo F, Kassambara A, Sbarrato T, Morano F, Ritorto G, Borelli B, Boccaccino A, Conca V, Giordano M, Ugolini C, Fieschi J, Papadopulos A, Massoue C, Aprile G, Antonyzzo L, Gelsomino F, Martinelli E, Pella N, Masi G, Fontanini G, Boni L, Galon J, Cremolini C | 2022 | The Lancet Oncology | Oncology | Multiplex IHC, Spatial Analysis | HALO |
| NKG2A and HLA-E define an alternative immune checkpoint axis in bladder cancer | Salome B, Sfakianos J, Ranti D, Daza J, Bieber C, Charap A, Hammer C, Banchereau R, Farkas A, Ruan D, Izadmehr S, Geanon D, Kelly G, Real R, Lee B, Beaumont K, Shroff S, Wang Y, Wang Y, Thin T, Garcia-Barros M, Hegewisch-Solloa E, Mace E, Wang L, O'Donnell T, Chowell D, Fernandez-Rodriguez R, Skobe M, Taylor N, Kim-Schulze S, Sebra R, Palmer D, Clancy-Thompson E, Hammond S, Kamphorst A, Malmberg K, Marcenaro E, Romero P, Brody R, Viard M, Yuki Y, Martin M, Carrington M, Mehrazin R, Wilund P, Mellman I, Mariathasan S, Zhu J, Galsky M, Bhardwaj N, Horowitz A | 2022 | Cancer Cell | Oncology, Immuno-oncology | Classifier, Multiplex IHC | HALO, HALO AI |
| Ghrelin May Inhibit Inflammatory Response and Apoptosis During Ischemia-Reperfusion Injury | Fukunaga N, Ribeiro R, Bissoondath V, Billia F, Rao V | 2022 | Transplantation Proceedings | Other | Multiplex IHC | HALO |
| Mouse organoids as an in vitro tool to study the in vivo intestinal response to cytotoxicants | Jardi F, Kelly C, Teague C, Fowler-Williams H, Sevin D, Rodrigues D, Jo H, Ferreira S, Herpers B, Van Heerden M, de Kok T, Pin C, Lynch A, Duckworth C, De Jonghe S, Lammens L, Pritchard D | 2022 | Archives of Toxicology | Toxicology | Multiplex IHC | HALO |
| Defactinib, pembrolizumab, and gemcitabine in patients with advanced treatment refractory pancreatic cancer: A phase I, dose escalation, and expansion study | Wang-Gillam A, Lim K, McWilliams R, Suresh R, Lockhart A, Brown A, Breden M, Belle J, Herndon J, Bogner S, Pedersen K, Tan B, Boice N, Acharya A, Abdiannia M, Gao F, Yoon H, Zhu M, Trikalinos N, Ratner L, Aranha O, Hawkins W, Herzog B, DeNardo D | 2022 | Clinical Cancer Research | Immuno-oncology | Multiplex IHC, Spatial Analysis | HALO |
| Gasdermin D maintains bone mass by rewiring the endo-lysosomal pathway of osteoclastic bone resorption | Li M, Yang D, Yan H, Tang Z, Jiang D, Zhang J, Chi Z, Nie W, Zhen W, Yu W, Chen S, Wang Z, Yu Q, Zhang X, Yang F, Fan S, Lin X, Wang D | 2022 | Developmental Cell | Other | Area Quantification, Multiplex IHC | HALO |
| Th1-involved immune infiltrates improve neoadjuvant chemoradiotherapy response of esophageal squamous cell carcinoma | Yuan J, Weng Z, Tan Z, Luo K, Zhong J, Xie X, Qu C, Lin X, Yang H, Wen J, Fu J | 2022 | Cancer Letters | Immuno-oncology | Multiplex IHC, Spatial Analysis | HALO |
| Oct4 promoted proliferation, migration, invasion, and epithelial-mesenchymal transition (EMT) in colon cancer cells by activating the SCF/c-Kit signaling pathway | Bu X, Liu Y, Wang L, Yan Z, Xin G, Su W | 2022 | Cell Cycle | Oncology | Multiplex IHC | HALO |
| The chromatin remodeler CHD6 promotes colorectal cancer development by regulating TMEM65-mediated mitochondrial dynamics via EGF and Wnt signaling | Zhang B, Liu Q, Wen W, Gao H, Wei W, Tang A, Qin B, Lyu H, Meng X, Li K, Jin H, Yu F, Pan Q Lin J, Lee M | 2022 | Cell Discovery | Oncology | Multiplex IHC, TMA | HALO |
| Identification and validation of DPY30 as a prognostic biomarker and tumor immune microenvironment infiltration characterization in esophageal cancer | Mei P, Xiao H, Guo Q, Meng W, Wang M, Huang Q, Liao Y | 2022 | Oncology Letters | Oncology | Multiplex IHC | HALO |
| Intranasal mRNA-LNP vaccination protects hamsters from SARS-CoV-2 infection | Vaca G, Meyer M, Cadete A, Hsiao C, Golding A, Jeon A, Jacquinet E, Azcue E, Guan C, Sanchez-Felix X, Pietzsch C, Mire C, Hyde M, Comeaux M, Williams J, Sung J, Carfi A, Edwards D, Bukreyev A, Bahl K | 2023 | bioRxiv | Infectious Disease | Multiplex IHC | HALO |
| Prognostic Value of CD8+ Lymphocytes in Hepatocellular Carcinoma and Perineoplastic Parenchyma Assessed by Interface Density Profiles in Liver Resection Samples | Stulpinas R, Zilenaite-Petrulaitiene D, Rasmusson A, Gulla A, Grigonyte A, Strupas K, Laurinavicius A | 2023 | Cancers | Oncology | Multiplex IHC, HALO AI | HALO, HALO AI |
| In vivo induction of activin A-producing alveolar macrophages supports the progression of lung cell carcinoma | Taniguchi S, Matsui T, Kimura K, Funaki S, Miyamoto Y, Uchida Y, Sudo T, Kikuta J, Hara T, Motooka D, Liu Y-C, Okuzaki D, Morii E, Emoto N, Shintani Y, Ishii M | 2023 | Nature Communications | Immuno-oncology | Multiplex IHC | HALO |
| Pretreatment with 3-methyladenine ameliorated Pseudomonas aeruginosa-induced acute pneumonia by inhibiting cell death of neutrophils in a mouse infection model | Yue L, Qi J, Yuan J, Wang X, Wang Y, Shan B, Ke H, Li H, Luan N, Liu C | 2023 | International Journal of Medical Microbiology | Infectious Disease | Multiplex IHC | HALO |
| Polycomb deficiency drives a FOXP2-high aggressive state targetable by epigenetic inhibitors | Chen F, Byrd A, Liu J, Flight R, DuCote T, Naughton K, Song X, Edgin A, Lukyanchuk A, Dixon D, Gosser C, Esoe D-P, Jayswal R, Orkin S, Moseley H, Wang C, Brainson C | 2023 | Nature Communications | Oncology | Multiplex IHC, HALO AI | HALO, HALO AI |
| Combined KRASG12C and SOS1 inhibition enhances and extends the anti-tumor response in KRASG12C-driven cancers by addressing intrinsic and acquired resistance | Thatikonda V, Lu H, Jurado S, Kostyrko K, Bristow C, Bosch K, Feng N, Gao S, Gerlach D, Gmachi M, Lieb S, Jeschko A, Machado A, Marszalek E, Mahendra M, Jaeger P, Sorokin A, Strauss S, Trapani F, Kopetz S, Vellano C, Petronczki M, Kraut N, Heffernan T, Marszalek J, Pearson M, Waizenegger I, Hofmann M | 2023 | bioRxiv | Oncology | ISH/FISH, Multiplex IHC, Highplex FL, Figure Maker | HALO |
| APOBEC3B coordinates R-loop to promote replication stress and sensitize cancer cells to ATR/Chk1 inhibitors | Zong C, Zhang Z, Gao L, He J, Wang Y, Li Q, Liu X, Yang J, Chen D, Huang R, Zheng G, Jin X, Wei W, Jia R, Shen J | 2023 | Research Square | Oncology | Multiplex IHC | HALO |
| Nucleolin mediates SARS-CoV-2 replication and viral-induced apoptosis of host cells | Merino V, Yan Y, Ordonez A, Bullen C, Lee A, Saeki H, Ray K, Huang T, Jain S, Pomper M | 2023 | Antiviral Research | Infectious Disease | Area Quantification, Multiplex IHC | HALO |
| CD8+ Cell Density Gradient across the Tumor Epithelium–Stromal Interface of Non-Muscle Invasive Papillary Urothelial Carcinoma Predicts Recurrence-Free Survival after BCG Immunotherapy | Drachneris J, Rasmusson A, Morkunas M, Fabijonavicius M, Cekauskas A, Jankevicius F, Laurinavicius A | 2023 | Cancers | Immuno-oncology | Multiplex IHC, Spatial Analysis, HALO AI | HALO |
| IL-13RA2 downregulation in fibroblasts promotes keloid fibrosis via JAK/STAT6 activation | Chao H, Zheng L, Hsu P, He J, Wu R, Xu S, Zeng R, Zhou Y, Ma H, Liu H, Tang Q | 2023 | JCI Insight | Fibrosis | Multiplex IHC | HALO |
| Oncolytic BHV-1 Is Sufficient to Induce Immunogenic Cell Death and Synergizes with Low-Dose Chemotherapy to Dampen Immunosuppressive T Regulatory Cells | Davola M, Cormier O, Vito A, El-Sayes N, Collins S, Salem O, Revill S, Ask K, Wan Y, Mossman K | 2023 | Cancers | Oncology | Multiplex IHC | HALO |
| Synergistic therapeutic combination with a CAF inhibitor enhances CAR-NK-mediated cytotoxicity via reduction of CAF-released IL-6 | Lee Y, Go G, Koh E, Yoon H, Seo M, Hong S, Jeong J, Kim J, Cho D, Kim T, Kim S, Jun E, Jang M | 2023 | Journal for ImmunoTherapy of Cancer | Immuno-oncology | Area Quantification, Multiplex IHC | HALO |
| Pan-tumor T-lymphocyte detection using deep neural networks: Recommendations for transfer learning in immunohistochemistry | Wilm F, Ihling C, Méhes G, Terracciano L, Puget C, Klopfleisch R, Schüffler P, Aubreville M, Maier A, Mrowiec T, Breininger K | 2023 | Journal of Pathology Informatics | Oncology | Multiplex IHC | HALO, HALO AI |
| Radiation-induced persistent DNA damage response and late toxicity in cardiac tissue | Shigemori K, Jiang Y, Martin J, Hawkins M, Ryan A, Parkes E | 2023 | bioRxiv | Other | Multiplex IHC | HALO, HALO AI |
| Single-cell analysis reveals changes in BCG vaccine-injected mice modeling tuberculous meningitis brain infection | Zhang X, Zhao Z, Wu Q, Wang L, Li L, Wang M, Ren Y, Pan L, Tang H, Li F | 2023 | Cell Reports | Infectious Disease | Multiplex IHC, Highplex FL | HALO |
| Notch3 regulates Mybl2 via HeyL to limit proliferation and tumor initiation in breast cancer | Brahim S, Negulescu A, Geneste C, Schott T, Lin S, Morel L, Rama N, Gadot N, Treilleux I, Mehlen P, Meurette O | 2023 | Cell Death & Disease | Oncology | Multiplex IHC | HALO |
| Electroacupuncture Zusanli (ST36) Relieves Somatic Pain in Colitis Rats by Inhibiting Dorsal Root Ganglion Sympathetic-Sensory Coupling and Neurogenic Inflammation | Wang Y, Zhu H, Lv X, Ren X, Peng Y, Qu J, Shen X, Sun R, Xiao M, Zhang H, Chen Z, Cong P | 2023 | Neural Plasticity | Neuroscience | Multiplex IHC | HALO |
| Myeloid-specific deletion of activating transcription factor 6 alpha increases CD11b+ macrophage subpopulations and aggravates lung fibrosis | Mekhael O, Revill S, Hayat A, Cass S, MacDonald K, Vierhout M, Ayoub A, Reihani A, Padwal M, Imani J, Ayaub E, Yousof T, Dvorkin-Gheva A, Rullo A, Hirota J, Richards C, Bridgewater D, Stämpfli M, Hambly N, Naqvi A, Kolb M, Ask K | 2023 | Immunology and Cell Biology | Immunology, Fibrosis | Classifier, Area Quantification, FISH, Multiplex IHC | HALO |
| Morphology-guided transcriptomic analysis of human pancreatic cancer organoids reveals microenvironmental signals that enhance invasion | Jeong Y, Knutsdottir H, Shojaeian F, Lerner M, Wissler M, Henriet E, Ng T, Datta S, Navarro-Serer B, Chianchiano P, Kinny-Koster B, Zimmerman J, Stein-O'Brien G, Gaida M, Eshleman J, Lin M, Fertig E, Ewald A, Bader J, Wood L | 2023 | The Journal of Clinical Investigation | Oncology | Multiplex IHC | HALO |
| Free fatty acids induce coronary microvascular dysfunction via inhibition of the AMPK/KLF2/eNOS signaling pathway | Zhang Y, Zhao J, Ren C, Hu B, Ding R, He Z, Liang C | 2023 | International Journal of Molecular Medicine | Other | Multiplex IHC | HALO |
| Loss of Peroxiredoxin IV Protects Mice from Azoxymethane/Dextran Sulfate Sodium-Induced Colorectal Cancer Development | Thapa P, Jiang H, Ding N, Hao Y, Alshahrani A, Lee E, Fujii J, Wei Q | 2023 | Antioxidants | Oncology | Multiplex IHC, Highplex FL | HALO |
| Cellular mechanisms of heterogeneity in NF2-mutant schwannoma | Chiasson-MacKenzie C, Vitte J, Liu C, Wright E, Flynn E, Stott S, Giovannini M, McClatchey A | 2023 | Nature Communications | Oncology | Classifier, Multiplex IHC, Spatial Analysis, FISH-IF | HALO |
| Immune and pathologic responses in patients with localized prostate cancer who received daratumumab (anti-CD38) or edicotinib (CSF-1R inhibitor) | Siddiqui B, Chapin B, Jindal S, Duan F, Basu S, Yadav S, Gu A, Espejo A, Kinder M, Pettaway C, Ward J, Tidwell R, Troncoso P, Corn P, Logothetis C, Knoblauch R, Hutnick N, Gottardis M, Drake C, Sharma P, Subudhi S | 2023 | Journal for ImmunoTherapy of Cancer | Immuno-oncology | Multiplex IHC, Figure Maker | HALO |
| YBX1 integration of oncogenic PI3K/mTOR signalling regulates the fitness of malignant epithelial cells | Bai Y, Gotz C, Chincarini G, Zhao Z, Slaney C, Boath J, Furic L, Angel C, Jane S, Phillips W, Stacker S, Farah C, Darido C | 2023 | Nature Communications | Oncology | Classifier, Multiplex IHC | HALO |
| HX009, a novel BsAb dual targeting PD1 x CD47, demonstrates potent anti-lymphoma activity in preclinical models | Ke H, Zhang F, Wang J, Xiong L, An X, Tu X, Chen C, Wang Y, Mao B, Guo S, Ju C, He X, Sun R, Zhang L, O'Connor O, Li Q | 2023 | Scientific Reports | Immuno-oncology | Multiplex IHC | HALO |
| Prognostic value of tumor immune microenvironment factors in patients with stage I lung adenocarcinoma | Xue Q, Wang Y, Zheng Q, Chen L, Lin Y, Jin Y, Shen X, Li Y | 2023 | American Journal of Cancer Research | Oncology | Classifier, Multiplex IHC, Highplex FL | HALO |
| An Immune-Related Gene Expression Signature Predicts Benefit from Adding Atezolizumab to FOLFOXIRI plus Bevacizumab in Metastatic Colorectal Cancer | Antoniotti C, Boccaccino A, Seitz R, Giordano M, Catteau A, Rossini D, Pietrantonio F, Salvatore L, McGregor K, Bergamo F, Conca V, Leonetti S, Morano F, Papiani G, Tamburini E, Bensi M, Murgioni S, Ross D, Passardi A, Boquet I, Nielsen T, Galon J, Varga M, Schweitzer B, and Cremolini C | 2023 | Clinical Cancer Research | Immuno-oncology | Multiplex IHC, Spatial Analysis | HALO |
| Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancer | Wang F, Long J, Li L, Wu Z, Da T, Wang X, Huang C, Jiang Y, Yao X, Ma H, Lian Z, Zhao Z, Cao J | 2023 | Science Advances | Oncology | Multiplex IHC, Spatial Analysis, Highplex FL | HALO |
| Dissecting tumor lymphocyte infiltration to predict benefit from immune-checkpoint inhibitors in metastatic colorectal cancer: lessons from the AtezoTRIBE study | Moretto R, Rossini D, Catteau A, Antoniotti C, Giordano M, Boccaccino A, Ugolini C, Proietti A, Conca V, Kassambara A, Pietrantonio F, Salvatore L, Lonardi S, Tamberi S, Tamburini E, Poma A, Fieschi J, Fontanini G, Masi G, Galon J, Cremolini C | 2023 | Journal for ImmunoTherapy of Cancer | Immuno-oncology | Multiplex IHC, Spatial Analysis | HALO |
| Transcriptional-translational conflict is a barrier to cellular transformation and cancer progression | Jana S, Brahma S, Arora S, Wladyka C, Hoang P, Blinka S, Hough R, Horn J, Liu Y, Wang L, Depeille P, Smith E, Montgomery R, Lee J, Haffner M, Vakar-Lopez F, Grivas P, Wright J, Lam H, Black P, Roose J, Ryazanov A, Subramaniam A, Henikoff S, and Hsieh A | 2023 | Cancer Cell | Oncology | Multiplex IHC, Highplex FL | HALO |
| Phase I/II sequencing study of azacitidine, epacadostat, and pembrolizumab in advanced solid tumors | Luke J, Fakih M, Schneider C, Chiorean E, Bendell J, Kristeleit R, Kurzrock R, Blagden S, Brana I, Goff L, O'Hayer K, Geschwindt R, Smith M, Zhou F, Naing A | 2023 | British Journal of Cancer | Immuno-oncology | Multiplex IHC | HALO |
| Targeting DRP1 mediated mitochondrial metabolism as a novel treatment strategy for triple negative breast cancer (TNBC) | Wang Y, Harada-Shoji N, Kitamura N, Yamazaki Y, Ebata A, Amari M, Watanabe M, Miyashita M, Tada H, Abe T, Suzuki T, Gonda K, Ishida T | 2023 | Research Square | Oncology | Multiplex IHC | HALO |
| Spatial metabolomics reveals glycogen as an actionable target for pulmonary fibrosis | Conroy L, Clarke H, Allison D, Valenca S, Sun Q, Hawkinson T, Young L, Ferreira J, Hammonds A, Dunne J, McDonald R, Absher K, Dong B, Bruntz R, Markussen K, Juras J, Alilain W, Liu J, Gentry M, Angel P, Waters C, Sun R | 2023 | Nature Communications | Fibrosis | Multiplex IHC, Highplex FL | HALO |
| Induction of cancer neoantigens facilitates development of clinically relevant models for the study of pancreatic cancer immunobiology | Panni U, Chen M, Zhang F, Cullinan D, Li L, James C, Zhang X, Rogers S, Alarcon A, Baer JM, Zhang D, Gao F, Miller CA, Gong Q, Lim KH, DeNardo DG, Goedegebuure SP, Gillanders WE, and Hawkins WG | 2023 | Cancer Immunology, Immunotherapy | Immuno-oncology | Multiplex IHC | HALO |
| Oncolytic DNX-2401 virotherapy plus pembrolizumab in recurrent glioblastoma: a phase 1/2 trial | Nassiri F, Patil V, Yefet L, Singh O, Liu J, Dang R, Yamaguchi T, Daras M, Cloughesy T, Colman H, Kumthekar P, Chen C, Aiken R, Groves M, Ong S, Ramakrishna R, Vogelbaum M, Khagi S, Kaley T, Melear J, Peereboom D, Rodriguez A, Yankelevich M, Nair S, Puduvalli V, Aldape K, Gao A, López-Janeiro Á, de Andrea C, Alonso M, Boutros P, Robbins J, Mason W, Sonabend A, Stupp R, Fueyo J, Gomez-Manzano C, Lang F, Zadeh G | 2023 | Nature Medicine | Immuno-oncology | Multiplex IHC | HALO |
| Preclinical Evaluation of 9MW2821, a Site-Specific Monomethyl Auristatin E-based Antibody-Drug Conjugate for treatment of Nectin-4-expressing Cancers | Zhou W, Fang P, Yu D, Ren H, You M, Yin L, Mei F, Zhu H, Wang Z, Xu H, Cao Y, Sun X, Xu X, Bi J, Wang J, Ma L, Wang X, Chen L, Zhang Y, Cen X, Zhu X, Lou L, Liu D, Tan X, Yang J, Meng T, Shen J | 2023 | Molecular Cancer Therapeutics | Oncology | Multiplex IHC | HALO |
| Tumor-derived semaphorin 4A improves PD-1–blocking antibody efficacy by enhancing CD8+ T cell cytotoxicity and proliferation | NAITO Y, KOYAMA S, MASUHIRO K, HIRAI T, UENAMI T, INOUE T, OSA A, MACHIYAMA H, WATANABE G, SAX N, VILLA J, KINUGASA-KATAYAMA Y, NOJIMA S, YAGA M, HOSONO Y, OKUZAKI D, SATOH S, TSUDA T, NAKANISHI Y, SUGA Y, MORITA T, FUKUSHIMA K, NISHIDE M, SHIROYAMA T, MIYAKE K, IWAHORI K, HIRATA H, NAGATOMO I, YANO Y, TAMIYA M, KUMAGAI T, TAKEMOTO N, INOHARA H, YAMASAKI S, YAMASHITA K, AOSHI T, AKBAY E, HOSEN N, SHINTANI Y, TAKAMATSU H, MORI M, TAKEDA Y, KUMANOGOH A | 2023 | Science Advances | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| SRF617 Is a Potent Inhibitor of CD39 with Immunomodulatory and Antitumor Properties | Warren M, Matissek S, Rausch M, Panduro M, Hall R, Dulak A, Brennan D, Das Yekkirala S, Koseoglu S, Masia R, Yang Y, Reddy N, Prenovitz R, Strand J, Zaidi T, Devereaux E, Jacoberger Foissac C, Stagg J, Lee B, Holland P, Palombella V, Lake A | 2023 | ImmunoHorizons | Immuno-oncology | Classifier, Area Quantification, Multiplex IHC | HALO |
| Immunoscore immune checkpoint using spatial quantitative analysis of CD8 and PD-L1 markers is predictive of the efficacy of anti- PD1/PD-L1 immunotherapy in non-small cell lung cancer | Ghiringhelli F, Bibeau F, Greillier L, Fumet J, Ilie A, Monville F, Laugé C, Catteau A, Boquet I, Majdi A, Morgand E, Oulkhouir Y, Brandone N, Adam J, Sbarrato T, Kassambara A, Fieschi J, Garcia S, Lepage A, Tomasini P, Galon J | 2023 | EBioMedicine | Immuno-oncology | Multiplex IHC, Spatial Analysis | HALO |
| An Fc-muted bispecific antibody targeting PD-L1 and 4-1BB induces antitumor immune activity in colorectal cancer without systemic toxicity | Cheng L, Zhu M, Gao Y, Liu W, Yin W, Zhou P, Zhu Z, Niu L, Zeng X, Zhang D, Fang Q, Wang F, Zhao Q, Zhang Y, Shen G | 2023 | Cellular and Molecular Biology Letters | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| Type III interferon inhibits bladder cancer progression by reprogramming macrophage-mediated phagocytosis and orchestrating effective immune responses | Wang B, Zhou B, Chen J, Sun X, Yang W, Yang T, Yu H, Chen P, Chen K, Huang X, Fan X, He W, Huang J, Lin T | 2023 | Research Square | Immuno-oncology | Multiplex IHC | HALO, HALO AI |
| Detection of virus in colorectal cancer and the tumor immune microenvironment in EBV-associated colorectal cancer | Lv D, Zuo Y, Bibi A, Meng T, Xu Y | 2023 | Research Square | Oncology, Infectious Disease | Multiplex IHC | HALO |
| Effects of a long-acting secretin peptide analog alone and in combination with a GLP-1R agonist in a diet-induced obesity mouse model | Loeffler M, Klepac K, Baljuls A, Hamilton B, Mayer-Wrangowski S, Haebel P, Zimmermann T | 2023 | Molecular Metabolism | Metabolism | Multiplex IHC | HALO |
| Endosomal Escape Vehicle Platform Enhances the Delivery of Oligonucleotides in Preclinical Models of Neuromuscular Disorders | Li X, Kheirabadi M, Dougherty P, Kamer K, Shen X, Estrella N, Peddigari S, Pathak A, Blake S, Sizensky E, del Genio C, Gaur A, Dhanabal M, Girgenrath M, Sethuraman N, Qian Z | 2023 | Molecular Therapy: Nucleic Acid | Neuroscience | Multiplex IHC | HALO |
| Endocrine therapy synergizes with SMAC mimetics to potentiate antigen presentation and tumor regression in hormone receptor-positive breast cancer | Hermida-Prado F, Xie Y, Sherman S, Nagy Z, Russo D, Akhshi T, Chu Z, Feit A, Campisi M, Chen M, Nardone A, Guarducci C, Lim K, Font-Tello A, Lee I, García-Pedrero J, Canadas I, Agudo J, Huang Y, Sella T, Jin Q, Tayob N, Mittendorf E, Tolaney S, Qiu X, Long H, Symmans W, Lin J, Santagata S, Bedrosian I, Yardley D, Mayer I, Richardson E, Oliveira G, Wu C, Schuster E, Dowsett M, Welm A, Barbie D, Metzger O, Jeselsohn R | 2023 | Cancer Research | Oncology | Multiplex IHC | HALO |
| Unbiased differential proteomic profiling between cancerassociated fibroblasts and cancer cell lines | Lau R, Yu L, Roumeliotis T, Stewart A, Pickard L, Riisanes R, Gurel B, de Bono J, Choudhary J, Banerji U | 2023 | Journal of Proteomics | Oncology | Multiplex IHC | HALO |
| Absence of sympathetic innervation hampers the generation of tertiary lymphoid structures upon acute lung inflammation | Riffard C, Letaïef L, Azar S, Casrouge A, Brunet I, Teillaud JL, Dieu-Nosjean MC | 2023 | Research Square | Immunology | Multiplex IHC | HALO, HALO AI |
| GREB1 isoform 4 is specifically transcribed by MITF and required for melanoma proliferation | Shinzawa K, Matsumoto S, Sada R, Harada A, Saitoh K, Kato K, Ikeda S, Hirayama A, Yokoi K, Tanemura A, Nimura K, Ikawa M, Soga T, Kikuchi A | 2023 | Oncogene | Oncology | Multiplex IHC | HALO |
| Intratumoral Heterogeneity of Ki67 Proliferation Index Outperforms Conventional Prognostic Factors in Hormone Receptor-Positive Breast Cancer | Zilenaite-Petrulaitiene D, Rasmusson A, Besusparis J, Valkiuniene R, Augulis R, Laurinaviciene A, Plancoulaine B, Petkevicius L, Laurinavicius A | 2023 | Research Square | Oncology | Multiplex IHC, Figure Maker | HALO, HALO AI |
| Low molecular weight heparin synergistically enhances the efficacy of adoptive and anti-PD-1-based immunotherapy by increasing lymphocyte infiltration in colorectal cancer | Quan Y, He J, Zou Q, Zhang L, Sun Q, Huang H, Li W, Xie K, Wie F | 2023 | Journal for ImmunoTherapy of Cancer | Immuno-oncology | Classifier, Multiplex IHC, Highplex FL | HALO |
| Neoadjuvant palbociclib plus either giredestrant or anastrozole in oestrogen receptor-positive, HER2-negative, early breast cancer (coopERA Breast Cancer): an open-label, randomised, controlled, phase 2 study | Hurvitz SA, Bardia A, Quiroga V, Park YH, Blancas I, Alonso-Romero JL, Vasiliev A, Adamchuk H, Salgado M, Yardley DA, Berzoy O, Zamora-Auñón P, Chan D, Spera G, Xue C, Ferreira E, Badovinac Crnjevic T, Pérez-Moreno PD, López-Valverde V, Steinseifer J, Fernando TM, Moore HM, Fasching PA, on behalf of the coopERA Breast Cancer study group | 2023 | The Lancet Oncology | Oncology | Multiplex IHC | HALO |
| MYC is a clinically significant driver of mTOR inhibitor resistance in breast cancer | Bhin J, Yemelyanenko J, Chao X, Klarenbeek S, Opdam M, Malka Y, Hoekman L, Kruger D, Bleijerveld O, Brambillasca CS, Sprengers J, Siteur B, Annunziato S, van Haren MJ, Martin NI, van de Ven M, Peters D, Agami R, Linn SC, Boven E, Altelaar M, Jonkers J, Zingg D, Wessels LFA | 2023 | Journal of Experimental Medicine | Oncology | Multiplex IHC | HALO |
| Pan-Cancer Analysis Revealed ITM2A as a Predictive Biomarker of Prognosis and Immunotherapy for Kidney Renal Clear Cell Carcinoma | Zhang H, Fang J, Ruan R, Yu J, Wang S | 2023 | Research Square | Oncology | Multiplex IHC | HALO |
| Pathologist-Trained Machine Learning Classifiers Developed to Quantitate Celiac Disease Features Differentiate Endoscopic Biopsies According to Modified Marsh Score and Dietary Intervention Response | Gruver A, Lu H, Zhao X, Fulford A, Soper M, Ballard D, Hanson J, Schade A, His E, Gottlieb K. Credille K | 2023 | Research Square | Gastroenterology | Multiplex IHC | HALO, HALO AI |
| Differential effects of PGAM5 knockout on high fat high fructose diet and methionine choline-deficient diet induced non-alcoholic steatohepatitis (NASH) in mice | Li L, Guo C, Yu Y, Tie L, Lu G, Liu F, Han X, Ji L, Zou X | 2023 | Cell & Bioscience | Metabolism | Area Quantification, Multiplex IHC | HALO |
| Neighboring macrophage-induced alteration in the phenotype of colorectal cancer cells in the tumor budding area | Kawamura I, Ohe R, Suzuki K, Kabasawa T, Kitoaka T, Takahara D, Kono M, Uchiyama N, Musha H, Futakuchi M, Motoi F | 2023 | Research Square | Immuno-oncology | Multiplex IHC, Spatial Analysis | HALO |
| Evaluation of the efficacy of Abelmoschus manihot (L.) on diabetic nephropathy by analyzing biomarkers in the glomeruli and proximal and distal convoluted tubules of the kidneys | Yu H, Wang M, Yu J, Tang H, Xu Q, Cheng N, Luo X, Wang Y, Ge H, Qiang L, Tang W, Gu H | 2023 | Frontiers in Pharmacology | Gastroenterology | Multiplex IHC | HALO |
| Immune response after pig-to-human kidney xenotransplantation: a multimodal phenotyping study | Loupy A, Goutaudier V, Giarraputo A, Mezine F, Morgand E, Robin B, Khalil K, Mehta S, Keating B, Dandro A, Certain A, Tharaux PL, Narula N, Tissier R, Giraud S, Hauet T, Pass HI, Sannier A, Wu M, Griesemer A, Ayares D, Tatapudi V, Stern J, Lefaucheur C, Bruneval P, Mangiola M, Montgomery RA | 2023 | The Lancet | Immunology | Multiplex IHC | HALO, HALO AI |
| A novel 4-1BB/HER2 bispecific antibody shows potent antitumor activities by increasing and activating tumor-infiltrating T cells | Shen A, Liu W, Wang H, Zeng X, Wang M, Zhang D, Zhao Q, Fang Q, Wang F, Cheng L, Shen G, Li Y | 2023 | American Journal of Cancer Research | Immuno-oncology | Multiplex IHC | HALO |
| Combining the AKT inhibitor capivasertib and SERD fulvestrant is effective in palbociclib-resistant ER+ breast cancer preclinical models | Hopcroft L, Wigmore EM, Williamson SC, Ros S, Eberlein C, Moss JI, Urosevic J, Carnevalli LS, Talbot S, Bradshaw L, Blaker C, Gunda S, Owenson V, Hoffmann S, Sutton D, Jones S, Goodwin RJAG, Willis BS, Rooney C, DeBruin E, Barry ST | 2023 | npj Breast Cancer | Oncology | Multiplex IHC | HALO, HALO AI |
| Macrophage reprogramming—rather than depletion —is efficacious in a specific subset of colorectal tumor models | Mohamed N, Amirkhah R, Lavaud X, Gilroy K, Bartolini R, Mulholland E, Garg A, Pennel K, Jackstadt R, Ridgway R, Nixon C, Hatthakarnku P, Campbell A, Leedham S, Edwards J, Dunne P, Barry S, Graham G, Sansom O | 2023 | Research Square | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| Early Detection of Genotoxic Hepatocarcinogens in Rats Using γH2AX and Ki-67: Prediction by Machine Learning | Michiba A, Gi M, Yokohira M, Sakurai E, Teramoto A, Kiriyama Y, Yamada S, Wanibuchi H, Tsukamoto T | 2023 | Toxicological Sciences | Oncology | Multiplex IHC, Highplex FL | HALO |
| Netrin-1 blockade inhibits tumour growth and EMT features in endometrial cancer | Cassier PA, Navaridas R, Bellina M, Rama N, Ducarouge B, Hernandez-Vargas H, Delord JP, Lengrand J, Paradisi A, Fattet L, Garin G, Gheit H, Dalban C, Pastushenko I, Neves D, Jelin R, Gadot N, Braissand N, Léon S, Degletagne C, Matias-Guiu X, Devouassoux-Shisheboran M, Mery-Lamarche EM, Allard J, Zindy E, Decaestecker C, Salmon I, Perol D, Dolcet X, Ray-Coquard I, Blanpain C, Bernet A, Mehlen P | 2023 | Nature | Oncology | Multiplex IHC | HALO |
| Feasibility and Impact of Immunohistochemistry-based Molecular Subtyping for Muscle-invasive Bladder Cancer in Patients Treated with Radiation-based Therapy | Hesswani C, Jackson CL, Marcq G, Hardy C, Kool R, Mansure JJ, Brimo F, Berman DM, Kassouf W | 2023 | European Urology Open Science | Oncology | Multiplex IHC | HALO |
| A TIAM1- TRIM28 complex mediates epigenetic silencing of protocadherins to promote migration of lung cancer cells | Ginn L, Maltas J, Baker MJ, Chaturvedi A, Wilson L, Guilbert R, Amaral FMR, Priest L, Mole H, Blackhall F, Diamantopoulou Z, Somervaille TCP, Hurlstone A, Mallairi A | 2023 | Proceedings of the National Academy of Sciences | Oncology | Multiplex IHC | HALO |
| Aberrant gene activation in synovial sarcoma relies on SSX specificity and increased PRC1.1 stability | Benabdallah NS, Dalal V, Scott RW, Marcous F, Sotiriou A, Kommoss FKF, Pejkovska A, Gaspar L, Wagner L, Sánchez-Rivera FJ, Ta M, Thornton S, Nielsen TO, Underhill TM, Banito A | 2023 | Nature Structural & Molecular Biology | Oncology | Multiplex IHC, TMA | HALO, HALO AI |
| Effects and Mechanisms of the Subtypes of Apolipoprotein E to the Immune State and Prognosis of hepatocellular carcinoma patients | Gao B, Zhou P, Wang L, Wang Z, Yi Y, Zhou J, Fan J, Qiu S, Xu Y | 2023 | Research Square | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| HER2-Selective and Reversible Tyrosine Kinase Inhibitor Tucatinib Potentiates the Activity of T-DM1 in Preclinical Models of HER2-positive Breast Cancer | Olson D, Taylor J, Willis K, Hensley K, Allred S, Zaval M, Farr L, Thurman R, Jain N, Hein R, Ulrich M, Peterson S, Kulukian A | 2023 | Cancer Research Communications | Oncology | Classifier, Multiplex IHC | HALO |
| Icariside II potentiates the anti-PD-1 antitumor effect by reducing chemotactic infiltration of myeloid-derived suppressor cells into the tumor microenvironment via ROS-mediated inactivation of the SRC/ERK/STAT3 signaling pathways | Kong Q, Ma M, Zhang L, Liu S, He S, Wu J, Liu B, Dong J | 2023 | Phytomedicine | Immuno-oncology | Multiplex IHC | HALO |
| Establishment of reference intervals of endometrial immune cells during the mid-luteal phase | Yu S, Huang C, Lian R, Diao L, Zhang X, Cai S, Wei H, Chen C, Li Y, Zeng Y | 2023 | Journal of Reproductive Immunology | Immunology | Classifier, Multiplex IHC | HALO |
| Anticoagulants Enhance Molecular and Cellular Immunotherapy of Cancer by Improving Tumor Microcirculation Structure and Function and Redistributing Tumor Infiltrates | Wei F, Su Y, Quan Y, Li X, Zou Q, Zhang L, Li S, Jiang M, Lin G, Liang P, He J, Xie K | 2023 | Clinical Cancer Research | Immuno-oncology | Classifier, Multiplex IHC, Spatial Analysis, Highplex FL | HALO |
| Apolipoprotein A-IV of diabetic-foot patients upregulates tumor necrosis factor α expression in microfluidic arterial models | Ji J, Zhao X, Huang J, Wu X, Xie F, Li L, Wang T, Mi S | 2023 | Experimental Biology and Medicine | Other | Multiplex IHC | HALO |
| Mitochondria-localized cGAS suppresses ferroptosis to promote cancer progression | Qiu S, Zhong X, Meng X, Li S, Qian X, Lu H, Cai J, Zhang Y, Wang M, Ye Z, Zhang H, Gao P | 2023 | Cell Research | Oncology | Multiplex IHC | HALO |
| Spatial mapping reveals granuloma diversity and histopathological superstructure in human tuberculosis | Sawyer A, Patrick E, Edwards J, Wilmott J, Fielder T, Yang Q, Barber D, Ernst J, Britton W, Palendira U, Chen X, Feng C | 2023 | Journal of Experimental Medicine | Immunology | Multiplex IHC, Spatial Analysis, Highplex FL | HALO |
| Targeting the IL1β Pathway for Cancer Immunotherapy Remodels the Tumor Microenvironment and Enhances Antitumor Immune Responses | Diwanji R, O'Brien N, Choi J, Nguyen B, Laszewski T, Grauel A, Yan Z, Xu X, Wu J, Ruddy D, Piquet M, Pelletier M, Savchenko A, Charette L, Rodrik-Outmezguine V, Baum J, Millholland J, Wong C, Martin A, Dranoff G, Pruteanu-Malinici I, Cremasco V, Sabatos-Peyton C, Jayaraman P | 2023 | Cancer Immunology Research | Immuno-oncology | Multiplex IHC | HALO |
| Spinal Cord Stimulation Increases Chemoefficacy and Prevents Paclitaxel-Induced Pain via CX3CL1 | Sivanesan E, Sanchez K, Zhang C, He S, Linderoth B, Stephens K, Raja S, Guan Y | 2023 | Neuromodulation: Technology at the Neural Interface | Oncology | Multiplex IHC | HALO |
| DNA Damage-Induced, S-Phase Specific Phosphorylation of Orc6 is Critical for the Maintenance of Genome Stability | Lin Y, Liu D, Chakraborty A, Macias V, Brister E, Sonalkar J, Shen L, Mitra J, Ha T, Kajdacsy-Balla A, Prasanth K, Prasanth S | 2023 | Molecular and cellular biology | Other | Multiplex IHC | HALO, HALO AI |
| Using artificial intelligence to identify tumor microenvironment heterogeneity in non-small cell lung cancers | DuCote T, Naughton K, Skaggs E, Bocklage T, Allison D, Brainson C | 2023 | Laboratory Investigation | Oncology | Multiplex IHC | HALO, HALO AI |
| Whole-Slide Imaging, Mutual Information Registration for Multiplex Immunohistochemistry and Immunofluorescence | Doyle J, Green B, Eminizer M, Jimenez-Sanchez D, Lu S, Engle E, Xu H, Ogurtsova A, Lai J, Soto-Diaz S, Roskes J, Deutsch J, Taube J, Sunshine J, Szalay A | 2023 | Laboratory Investigation | Other | Multiplex IHC, Registration | HALO |
| Inhibiting membrane rupture with NINJ1 antibodies limits tissue injury | Kayagaki N, Stowe I, Alegre K, Deshpande I, Wu S, Lin Z, Kornfeld O, Lee B, Zhang J, Liu J, Suto E, Lee W, Schneider K, Lin W, Seshasayee D, Bhangale T, Chalouni C, Johnson M, Joshi P, Mossemann J, Zhao S, Ali D, Goldenberg N, Sayed B, Steinberg B, Newton K, Webster J, Kelly R, Dixit V | 2023 | Nature | Other | Multiplex IHC | HALO, HALO AI |
| Nicotinamide N-methyltransferase sustains a core epigenetic program that promotes metastatic colonization in breast cancer | Pinto Couto J, Vulin M, Jehanno C, Coissieux M, Hamelin B, Schmidt A, Ivanek R, Sethi A, Bräutigam K, Frei A, Hager C, Manivannan M, Gómez-Miragaya J, Obradović M, Varga Z, Koelzer V, Mertz K, Bentires-Alj M | 2023 | The EMBO Journal | Oncology | Area Quantification, Multiplex IHC | HALO, HALO AI |
| The tumor immune microenvironment of nasopharyngeal carcinoma after gemcitabine plus cisplatin treatment | Lv J, Wei Y, Yin J, Chen Y, Zhou G, Wei C, Liang X, Zhang Y, Zhang C, He S, He Q, Huang Z, Guan J, Shen J, Li X, Li J, Li W, Tang L, Mao Y, Guo R, Sun R, Zheng Y, Zhou W, Xiong K, Wang S, Jin X, Liu N, Li G, Kuang D, Sun Y, Ma J | 2023 | Nature Medicine | Oncology | Multiplex IHC, Highplex FL | HALO |
| Immune profiling and RNA-seq uncover the cause of partial unexplained recurrent implantation failure | Fan X, Zhao Q, Li Y, Chen Z, Liao J, Chen H, Meng F, Lu G, Lin G, Gong F | 2023 | International Immunopharmacology | Immunology | Classifier, Multiplex IHC | HALO |
| Targeting the ATF6-mediated ER stress response and autophagy blocks integrin-driven prostate cancer progression | Macke A, Pachikov A, Divita T, Morris M, LaGrange C, Holzapfel M, Kubyshkin A, Zyablitskaya E, Makalish T, Eremenko S, Qiu H, Riethoven J, Hemstreet G, Petrosyan A | 2023 | Molecular Cancer Research | Oncology | Classifier, Area Quantification, Multiplex IHC, TMA | HALO |
| Comparing the peri-implantation endometrial T-bet/GATA3 ratio between control fertile women and patients with recurrent miscarriage: establishment and application of a reference range Get access Arrow | Yu S, Diao L, Lian R, Chen C, Huang C, Li X, Li Y, Zeng Y | 2023 | Human Reproduction | Other | Classifier, Multiplex IHC | HALO |
| Jing-Fang powder ethyl acetate extracts attenuate atopic dermatitis by modulating T-cell activity | Zhao G, Tong Y, Xu J, Zhu W, Zeng J, Liu R, Luan F, Zeng N | 2023 | Molecular Immunology | Immunology, Dermatology | Multiplex IHC | HALO |
| LY6E is a pan-coronavirus restriction factor in the respiratory tract | Mar K, Wells A, Van Dyke M, Lopez A, Eitson J, Fan W, Hanners N, Evers B, Shelton J, Schoggins J | 2023 | Nature Microbiology | Infectious Disease | Multiplex IHC | HALO |
| Spatial Proximity and Relative Distribution of Tumor-Infiltrating Lymphocytes and Macrophages Predict Survival in Melanoma | De Logu F, Ugolini F, Iannone L F, Simi S, Maio V, de Giorgi V, di Giacomo A M, Miracco C, Cossu A, Palmieri G, Mandalà M, Massi D | 2023 | Laboratory Investigation | Oncology | Multiplex IHC, Spatial Analysis | HALO, HALO Link |
| Concurrent targeting of HDAC and PI3K to overcome phenotypic heterogeneity of castration-resistant and neuroendocrine prostate cancers | Zhang A, Lau N, Wong A, Brown L, Coleman I, Sarkar N, Li D, DeLucia D, Labrecque M, Nguyen H, Conner J, Dumpit R, True L, Lin D, Corey E, Alumkal J, Nelson P, Morrissey C, Lee J | 2023 | Cancer Research Communications | Oncology | Multiplex IHC, Figure Maker | HALO |
| Deep radiomics-based fusion model for prediction of bevacizumab treatment response and outcome in patients with colorectal cancer liver metastases: a multicentre cohort study | Zhou S, Sun D, Mao W, Liu Y, Cen W, Ye L, Liang F, Xu J, Shi H, Ji Y, Wang L, Chang W | 2023 | eClinicalMedicine | Oncology | Classifier, Multiplex IHC | HALO |
| Inhibition of mitochondrial fission activates glycogen synthesis to support cell survival in colon cancer | Hasani S, Young LEA, Van Nort W, Banerjee M, Rivas DR, Kim J, Xiong X, Sun RC, Gentry MS, Sesaki H, Gao T | 2023 | Cell Death & Disease | Oncology | Multiplex IHC | HALO |
| Histological spatial analysis on the induction of PD-L1+ macrophages by CD8+ T cells at the marginal microenvironment of triple-negative breast cancer | Suzuki K, Ohe R, Kabasawa T, Kitaoka T, Kawai M, Motoi F, Futakuchi M | 2023 | Breast Cancer | Oncology | Multiplex IHC, Spatial Analysis | HALO |
| Positive regulatory loop of platelet-derived growth factor DD-induced STAT3 activation is associated with poor prognosis in advanced urothelial carcinoma | Ando K, Kurashina R, Motoi N, Iizuka T, Inoue M, Maruyama R, Mitani K, Takenobu H, Haruta M, Onuki R, Matsuoka Y, Kamijo T, Kageyama Y | 2023 | Biochemical and Biophysical Research Communications | Oncology | Multiplex IHC, TMA | HALO |
| Effect of microbial muramidase supplementation in diets formulated with different fiber profiles for broiler chickens raised under various coccidiosis management programs | Bortoluzzi C, Perez-Calvo E, Olsen P B, van der Vaart S, van Eerden E, Schmeisser J, Eising I, Segobola P, Sorbara J-O B | 2023 | Poultry Science | Infectious Disease | Multiplex IHC | HALO |
| Prognostic significance of tumor microenvironment assessed by machine learning algorithm in surgically resected non-small cell lung cancer | Terada Y, Isaka M, Ono A, Kawata T, Serizawa M, Mori K, Muramatsu K, Tone K, Kenmotsu H, Ohshima K, Urakami K, Nagashima T, Kusuhara M, Akiyama Y, Sugino T, Takahashi T, Ohde Y | 2023 | Cancer Reports | Oncology | Multiplex IHC | HALO |
| Targeting intracellular oncoproteins with dimeric IgA promotes expulsion from the cytoplasm and immune-mediated control of epithelial cancers | Biswas S, Mandal G, Anadon C M, Chaurio R A, Lopez-Bailon L U, Nagy M Z, Mine J A, Hanggi K, Sprenger K B, Innamarato P, Harro C M, Powers J J, Johnson J, Fang B, Eysha M, Nan X, Li R, Perez B A, Curiel T J, Yu X, Rodriguez P C, Conejo-Garcia J R | 2023 | Immunity | Oncology | Multiplex IHC | HALO |
| Comprehensive analysis reveals potential therapeutic targets and an integrated risk stratification model for solitary fibrous tumors | Zhang R, Yang Y, Hu C, Huang M, Cen W, Ling D, Long Y, Yang X-H, Xu B, Peng J, Wang S, Zhu W, Wei M, Yang J, Xu Y, Zhang X, Ma J, Wang F, Zhang H, Ma P, Zhu X, Song G, Sun L-Y, Wang D-S, Wang F-H, Li Y-H, Santagata S, Li Q, Feng Y-F, Du Z | 2023 | Nature Communications | Oncology | Multiplex IHC | HALO |
| Effects of total flavones of Abelmoschus manihot (L.) on the treatment of diabetic nephropathy via the activation of solute carriers in renal tubular epithelial cells | Yu H, Tang H, Wang M, Xu Q, Yu J, Ge H, Qiang L, Tang W, Gu HF | 2023 | Biomedicine & Pharmacotherapy | Other | Multiplex IHC, Figure Maker | HALO |
| GRP78-CAR T cell effector function against solid and brain tumors is controlled by GRP78 expression on T cells | Ibanez J, Hebbar N, Thanekar U, Yi Z, Houke H, Ward M, Nevitt C, Tian L, Mack SC, Sheppard H, Chiang J, Velasquez MP, Krenciute G | 2023 | Cell Reports Medicine | Immuno-oncology | Multiplex IHC | HALO |
| mRNA Vaccine Trafficking and Resulting Protein Expression After Intramuscular Administration | Hassett KJ, Rajilic IL, Bahl K, White R, Cowens K, Jacquinet E, Burke KE | 2023 | Molecular Therapy: Nucleic Acid | Other | ISH, Multiplex IHC | HALO |
| Parishin treatment alleviates cardiac aging in naturally aged mice | Zhou S, Zhao X, Wu L, Yan R, Sun L, Zhang Q, Gong C, Liu Y, Xiang L, Li S, Wang P, Yang Y, Ren W, Jiang J, Yang Y | 2023 | Heliyon | Other | Area Quantification, Multiplex IHC | HALO |
| Expression and Correlation of Complement C3 and C4 in Serum and Maternal-Fetal Interface in Patients with Unexplained Recurrent Spontaneous Abortion: A Prospective Cohort Study | Zhou Z, Xie H, Liu M, Li R, Jiang W, Zheng Y, Lv Q | 2023 | Clinical and Experimental Obstetrics & Gynecology | Other | Multiplex IHC | HALO |
| The tumor-derived cytokine Chi3l1 induces neutrophil extracellular traps that promote T cell exclusion in triple-negative breast cancer | Taifour T, Attalla SS, Zuo D, Gu Y, Sanguin-Gendreau V, Proud H, Solymoss E, Bui T, Kuasne H, Papavasiliou V, Lee CG, Kamle S, Siegel PM, Elias JA, Park M, Muller WJ | 2023 | Immunity | Immuno-oncology | Classifier, Multiplex IHC, Spatial Analysis, Highplex FL | HALO |
| Intratumoral aluminum hydroxide–anchored IL-12 drives potent antitumor activity by remodeling the tumor microenvironment | Battula S, Papastoitsis G, Kaufman HL, Wittrup KD, Schmidt MM | 2023 | JCI Insight | Oncology | Multiplex IHC | HALO |
| CD15 Is a Risk Predictor and a Novel Target in Clear Cell Renal Cell Carcinoma | Stenzela PJ, Schindeldeckera MS, Seidmanna L, Herpel E, Hohenfellnere M, Hatiboglue G, Foerscha S, Porubskya S, Macher-Goeppingera S, Rotha W, Tagscherer KE | 2023 | Pathobiology | Oncology | Multiplex IHC, TMA | HALO |
| Fusion-negative rhabdomyosarcoma 3D organoids to predict effective drug combinations: A proof-ofconcept on cell death inducers | Savary C, Luciana L, Huchede´ P, Tourbez A, Coquet C, Broustal M, Gonzalez AL, Deligne C, Diot T, Naret O, Costa M, Meynard N, Barbet V, Muller K, Tonon L, Gadot N, Degletagne C, Attignon V, Le´on S, Vanbelle C, Bomane A, Rochet I, Mournetas V, Oliveira L, Rinaudo P, Bergeron C, Dutour A, Cordier-Bussat M, Roch A, Brandenberg N, El Zein S, Watson S, Orbach D, Delattre O, Dijoud F, Corradini N, Picard C, Maucort-Boulch D, Le Grand M, Pasquier E, Blay JY, Castets M, and Broutier L. | 2023 | Cell Reports Medicine | Oncology | Multiplex IHC | HALO |
| RFX6 facilitates aerobic glycolysis‐mediated growth and metastasis of hepatocellular carcinoma through targeting PGAM1 | Qiu Z, Wang C, Huang P, Yuan Y, Shi Y, Lin Z, Huang Z, Zuo D, Qiu J, He W, Shen J, Niu Y, Yuan Y, Li B | 2023 | Clinical and Translational Medicine | Oncology | Area Quantification, Multiplex IHC | HALO |
| Immune microenvironment of basal cell carcinoma and tumor regression following combined PD-1/LAG-3 blockade | Deutsch JS, Lai J, Schenk KM, Soni A, Will EM, Engle LL, Xu H, Ogurtsova A, Madan V, Chong JK, Wang D, Green BF, Nguyen P, Schollenberger MD, Lipson EJ, Taube JM | 2023 | Journal for ImmunoTherapy of Cancer | Immuno-oncology | Multiplex IHC | HALO |
| Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma | Sun Y, Wu P, Zhang Z, Wang Z, Zhou K, Song M, Ji Y, Zang F, Lou L, Rao K, Wang P, Gu Y, Gu J, Lu B, Chen L, Pan X, Zhao X, Peng L, Liu D, Chen X, Wu K, Lin P, Wu L, Su Y, Du M, Hou Y, Yang X, Qiu S, Shi Y, Sun H, Zhou J, Huang X, Peng D, Zhang L, Fan J | 2023 | Cancer Cell | Oncology | Classifier, Multiplex IHC, Spatial Analysis, Highplex FL | HALO |
| Tumor-associated fibrosis impairs immune surveillance and response to immune checkpoint blockade in non–small cell lung cancer | Herzog B, Baer J, Borcherding N, Kingston N, Belle J, Knolhoff B, Hogg G, Ahmad F, Kang L, Petrone J, Lin C, Govindan R, Denardo D | 2023 | Science Translational Medicine | Oncology | Classifier, Multiplex IHC | HALO |
| Cholesterol efflux drives the generation of immunosuppressive macrophages to promote the progression of human hepatocellular carcinoma | Li Z, Wang Y, Xing R, Zeng H, Yu X, Zhang Y, Xu J, Zheng L | 2023 | Cancer Immunology Research | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| Phase 1 Dose Escalation and Expansion Study of Golidocitinib, a Highly Selective JAK1 Inhibitor, in Relapsed or Refractory Peripheral T Cell Lymphomas | Song Y, Yoon D, Yang H, Cao J, Ji D, Koh Y, Jing H, Eom H, Kwak J, Lee W, Lee J, Shin H, Jin J, Wang M, Yang Q, Kim W, Zhu J | 2023 | Annals of Oncology | Immuno-oncology | Multiplex IHC | HALO |
| SMAD4 and KCNQ3 alterations are associated with lymph node metastases in oesophageal adenocarcinoma | Foley K, Shorthouse D, Rahrmann E, Zhuang L, Devonshire G, Gilbertson R, OCCAMS consortium, Fitzgerald R, Hall B | 2023 | Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease | Oncology | Multiplex IHC | HALO |
| Reanalysis of single-cell data reveals macrophage subsets associated with the immunotherapy response and prognosis of patients with endometrial cancer | Wu Q, Jiang G, Sun Y, Li B | 2023 | Experimental Cell Research | Immuno-oncology | Multiplex IHC | HALO |
| Telomere dysfunction in Tert knockout mice delays BrafV600E-induced melanoma development | Zhang J, Zhang F, Porter KI, Dakup PP, Wang S, Robertson GP, Gaddameedhi S, Zhu J | 2023 | International Journal of Cancer | Oncology | Multiplex IHC | HALO |
| Modified Bushen Yiqi formula enhances antitumor immunity by reducing the chemotactic recruitment of M2-TAMs and PMN-MDSCs in Lewis lung cancer-bearing mice | Kong Q, Zhu H, Gong W, Deng X, Liu B, Dong J | 2023 | Journal of Ethnopharmacology | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| Fibrosis induced by resident macrophages has divergent roles in pancreas inflammatory injury and PDAC | Baer JM, Zuo C, Kang LI, Alarcon de la Lastra A, Borcherding NC, Knolhoff BL, Bogner SJ, Zhu Y, Yang L, Laurent J, Lewis MA, Zhang N, Kim KW, Fields RC, Yokoyama WM, Mills JC, Ding L, Randolph GJ, DeNardo DG | 2023 | Nature Immunology | Immunology | Multiplex IHC | HALO |
| Tumor microenvironment-mediated immune profiles and efficacy of anti-PD-L1 antibody plus chemotherapy stratified by DLL3 expression in small-cell lung cancer | Shirasawa M, Yoshida T, Shiraishi K, Goto N, Yagishita S, Imabayashi T, Matsumoto Y, Masuda K, Shinno Y, Okuma Y, Goto Y, Horinouchi H, Yotsukura M, Yoshida Y, Nakagawa K, Naoki K, Tsuchida T, Hamamoto R, Yamamoto N, Motoi N, Kohno T, Watanabe SI, Ohe Y | 2023 | British Journal of Cancer | Immuno-oncology | Multiplex IHC | HALO |
| Targeting the metabolic enzyme PGAM2 overcomes enzalutamide resistance in castration-resistant prostate cancer by inhibiting BCL2 signaling | Li Z, Ning K, Zhao D, Zhou Z, Zhao J, Long X, Yang Z, Chen D, Cai X, Hong L, Zhang L, Zhou F, Wang J, Li Y | 2023 | Cancer Research | Oncology | Multiplex IHC | HALO |
| A microtubule stabilizer ameliorates protein pathogenesis and neurodegeneration in mouse models of repetitive traumatic brain injury | Zhao X, Zeng W, Xu H, Sun Z, Hu Y, Peng B, McBride JD, Duan J, Deng J, Zhang B, Kim SJ, Zoll B, Saito T, Sasaguri H, Saido TC, Ballatore C, Yao H, Wang Z, Trojanowski JQ, Brunden KR, Lee VMY, He Z | 2023 | Science Translational Medicine | neuroscience | Area Quantification, Object Colocalization, Multiplex IHC | HALO |
| Enlarged tumour-draining lymph node with immune-activated profile predict favourable survival in non-metastatic colorectal cancer | Guan X, Cheng P, Wei R, Li J, Jiao S, Zhao Z, Chen H, Liu Z, Jiang Z, Zheng Z, Zou S, Wang X | 2023 | British Journal of Cancer | Oncology | Multiplex IHC | HALO |
| Inhibition of the proline metabolism rate-limiting enzyme P5CS allows proliferation of glutamine-restricted cancer cells | Linder S, Bernasocchi T, Martínez-Pastor B, Sullivan K, Galbraith M, Lewis C, Ferrer C, Boon R, Silveira G, Cho H, Vidoudez C, Shroff S, Oliveira-Costa J, Ross K, Massri R, Matoba Y, Kim E, Rueda B, Stott S, Gottlieb E, Espinosa J, Mostoslavsky R | 2023 | Nature Metabolism | Oncology, Metabolism | Multiplex IHC, Registration | HALO |
| Intrauterine perfusion of dexamethasone improves pregnancy outcomes in recurrent reproductive failure patients with elevated uterine natural killer cells. A retrospective cohort study | Zhang F, Wang Z, Lian R, Diao L, Li Y, Wu Y, Yin T, Huang C | 2023 | American Journal of Reproductive Immunology | Other | Multiplex IHC | HALO |
| Protein Disulfide Isomerase A2 Is Correlated with Immune Infiltrates and Is a Novel Prognostic Biomarker in Glioma Patients | Ma Z, Liu Y, Zou N, Huang Z, Wang M, Li T, Zhou J, Chen L | 2023 | Current Medical Science | Oncology | Multiplex IHC | HALO |
| Gastric tubular adenocarcinoma with diffuse neutrophils infiltrating: characteristics and probable treatment strategy | Wang B, Zhu Y, Wang S, Li Z, Wang L, Rao W, Cheng N, Chen R, Ying J, Xue L | 2023 | Gastric Cancer | Oncology | Multiplex IHC, Spatial Analysis, Registration | HALO |
| Modified Bushen Yiqi Formula mitigates pulmonary inflammation and airway remodeling by inhibiting neutrophils chemotaxis and IL17 signaling pathway in rats with COPD | Kong Q, Wang B, Zhong Y, Chen W, Sun J, Liu B, Dong J | 2023 | Journal of Ethnopharmacology | Multiplex IHC | HALO | |
| Lymphoid tissues contribute to plasma viral clonotypes early after antiretroviral therapy interruption in SIV-infected rhesus macaques | Solis-Leal A, Boby N, Mallick S, Cheng Y, Wu F, de la Torre G, Dufour J, Alvarez X, Shivanna V, Liu Y, Fennessey C M, Lifson J D, Li Q, Keele B F, and Ling B | 2023 | Science Translational Medicine | Infectious Disease | Multiplex IHC | HALO |
| CD15 Is a Risk Predictor and a Novel Target in Clear Cell Renal Cell Carcinoma | Stenzela PJ, Schindeldeckera MS, Seidmanna L, Herpel E, Hohenfellnere M, Hatiboglue G, Foerscha S, Porubskya S, Macher-Goeppingera S, Rotha W, Tagscherer KE | 2023 | Pathobiology | Oncology | Multiplex IHC, TMA | HALO |
| Fusion-negative rhabdomyosarcoma 3D organoids to predict effective drug combinations: A proof-ofconcept on cell death inducers | Savary C, Luciana L, Huchede´ P, Tourbez A, Coquet C, Broustal M, Gonzalez AL, Deligne C, Diot T, Naret O, Costa M, Meynard N, Barbet V, Muller K, Tonon L, Gadot N, Degletagne C, Attignon V, Le´on S, Vanbelle C, Bomane A, Rochet I, Mournetas V, Oliveira L, Rinaudo P, Bergeron C, Dutour A, Cordier-Bussat M, Roch A, Brandenberg N, El Zein S, Watson S, Orbach D, Delattre O, Dijoud F, Corradini N, Picard C, Maucort-Boulch D, Le Grand M, Pasquier E, Blay JY, Castets M, and Broutier L. | 2023 | Cell Reports Medicine | Oncology | Multiplex IHC | HALO |
| RFX6 facilitates aerobic glycolysis‐mediated growth and metastasis of hepatocellular carcinoma through targeting PGAM1 | Qiu Z, Wang C, Huang P, Yuan Y, Shi Y, Lin Z, Huang Z, Zuo D, Qiu J, He W, Shen J, Niu Y, Yuan Y, Li B | 2023 | Clinical and Translational Medicine | Oncology | Area Quantification, Multiplex IHC | HALO |
| Immune microenvironment of basal cell carcinoma and tumor regression following combined PD-1/LAG-3 blockade | Deutsch JS, Lai J, Schenk KM, Soni A, Will EM, Engle LL, Xu H, Ogurtsova A, Madan V, Chong JK, Wang D, Green BF, Nguyen P, Schollenberger MD, Lipson EJ, Taube JM | 2023 | Journal for ImmunoTherapy of Cancer | Immuno-oncology | Multiplex IHC | HALO |
| Integrated multi-omics profiling to dissect the spatiotemporal evolution of metastatic hepatocellular carcinoma | Sun Y, Wu P, Zhang Z, Wang Z, Zhou K, Song M, Ji Y, Zang F, Lou L, Rao K, Wang P, Gu Y, Gu J, Lu B, Chen L, Pan X, Zhao X, Peng L, Liu D, Chen X, Wu K, Lin P, Wu L, Su Y, Du M, Hou Y, Yang X, Qiu S, Shi Y, Sun H, Zhou J, Huang X, Peng D, Zhang L, Fan J | 2023 | Cancer Cell | Oncology | Classifier, Multiplex IHC, Spatial Analysis, Highplex FL | HALO |
| Tumor-associated fibrosis impairs immune surveillance and response to immune checkpoint blockade in non–small cell lung cancer | Herzog B, Baer J, Borcherding N, Kingston N, Belle J, Knolhoff B, Hogg G, Ahmad F, Kang L, Petrone J, Lin C, Govindan R, Denardo D | 2023 | Science Translational Medicine | Oncology | Classifier, Multiplex IHC | HALO |
| Cholesterol efflux drives the generation of immunosuppressive macrophages to promote the progression of human hepatocellular carcinoma | Li Z, Wang Y, Xing R, Zeng H, Yu X, Zhang Y, Xu J, Zheng L | 2023 | Cancer Immunology Research | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| Phase 1 Dose Escalation and Expansion Study of Golidocitinib, a Highly Selective JAK1 Inhibitor, in Relapsed or Refractory Peripheral T Cell Lymphomas | Song Y, Yoon D, Yang H, Cao J, Ji D, Koh Y, Jing H, Eom H, Kwak J, Lee W, Lee J, Shin H, Jin J, Wang M, Yang Q, Kim W, Zhu J | 2023 | Annals of Oncology | Immuno-oncology | Multiplex IHC | HALO |
| SMAD4 and KCNQ3 alterations are associated with lymph node metastases in oesophageal adenocarcinoma | Foley K, Shorthouse D, Rahrmann E, Zhuang L, Devonshire G, Gilbertson R, OCCAMS consortium, Fitzgerald R, Hall B | 2023 | Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease | Oncology | Multiplex IHC | HALO |
| Reanalysis of single-cell data reveals macrophage subsets associated with the immunotherapy response and prognosis of patients with endometrial cancer | Wu Q, Jiang G, Sun Y, Li B | 2023 | Experimental Cell Research | Immuno-oncology | Multiplex IHC | HALO |
| Telomere dysfunction in Tert knockout mice delays BrafV600E-induced melanoma development | Zhang J, Zhang F, Porter KI, Dakup PP, Wang S, Robertson GP, Gaddameedhi S, Zhu J | 2023 | International Journal of Cancer | Oncology | Multiplex IHC | HALO |
| Modified Bushen Yiqi formula enhances antitumor immunity by reducing the chemotactic recruitment of M2-TAMs and PMN-MDSCs in Lewis lung cancer-bearing mice | Kong Q, Zhu H, Gong W, Deng X, Liu B, Dong J | 2023 | Journal of Ethnopharmacology | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| Fibrosis induced by resident macrophages has divergent roles in pancreas inflammatory injury and PDAC | Baer JM, Zuo C, Kang LI, Alarcon de la Lastra A, Borcherding NC, Knolhoff BL, Bogner SJ, Zhu Y, Yang L, Laurent J, Lewis MA, Zhang N, Kim KW, Fields RC, Yokoyama WM, Mills JC, Ding L, Randolph GJ, DeNardo DG | 2023 | Nature Immunology | Immunology | Multiplex IHC | HALO |
| Tumor microenvironment-mediated immune profiles and efficacy of anti-PD-L1 antibody plus chemotherapy stratified by DLL3 expression in small-cell lung cancer | Shirasawa M, Yoshida T, Shiraishi K, Goto N, Yagishita S, Imabayashi T, Matsumoto Y, Masuda K, Shinno Y, Okuma Y, Goto Y, Horinouchi H, Yotsukura M, Yoshida Y, Nakagawa K, Naoki K, Tsuchida T, Hamamoto R, Yamamoto N, Motoi N, Kohno T, Watanabe SI, Ohe Y | 2023 | British Journal of Cancer | Immuno-oncology | Multiplex IHC | HALO |
| Targeting the metabolic enzyme PGAM2 overcomes enzalutamide resistance in castration-resistant prostate cancer by inhibiting BCL2 signaling | Li Z, Ning K, Zhao D, Zhou Z, Zhao J, Long X, Yang Z, Chen D, Cai X, Hong L, Zhang L, Zhou F, Wang J, Li Y | 2023 | Cancer Research | Oncology | Multiplex IHC | HALO |
| A microtubule stabilizer ameliorates protein pathogenesis and neurodegeneration in mouse models of repetitive traumatic brain injury | Zhao X, Zeng W, Xu H, Sun Z, Hu Y, Peng B, McBride JD, Duan J, Deng J, Zhang B, Kim SJ, Zoll B, Saito T, Sasaguri H, Saido TC, Ballatore C, Yao H, Wang Z, Trojanowski JQ, Brunden KR, Lee VMY, He Z | 2023 | Science Translational Medicine | neuroscience | Area Quantification, Object Colocalization, Multiplex IHC | HALO |
| Enlarged tumour-draining lymph node with immune-activated profile predict favourable survival in non-metastatic colorectal cancer | Guan X, Cheng P, Wei R, Li J, Jiao S, Zhao Z, Chen H, Liu Z, Jiang Z, Zheng Z, Zou S, Wang X | 2023 | British Journal of Cancer | Oncology | Multiplex IHC | HALO |
| Inhibition of the proline metabolism rate-limiting enzyme P5CS allows proliferation of glutamine-restricted cancer cells | Linder S, Bernasocchi T, Martínez-Pastor B, Sullivan K, Galbraith M, Lewis C, Ferrer C, Boon R, Silveira G, Cho H, Vidoudez C, Shroff S, Oliveira-Costa J, Ross K, Massri R, Matoba Y, Kim E, Rueda B, Stott S, Gottlieb E, Espinosa J, Mostoslavsky R | 2023 | Nature Metabolism | Oncology, Metabolism | Multiplex IHC, Registration | HALO |
| Intrauterine perfusion of dexamethasone improves pregnancy outcomes in recurrent reproductive failure patients with elevated uterine natural killer cells. A retrospective cohort study | Zhang F, Wang Z, Lian R, Diao L, Li Y, Wu Y, Yin T, Huang C | 2023 | American Journal of Reproductive Immunology | Other | Multiplex IHC | HALO |
| Protein Disulfide Isomerase A2 Is Correlated with Immune Infiltrates and Is a Novel Prognostic Biomarker in Glioma Patients | Ma Z, Liu Y, Zou N, Huang Z, Wang M, Li T, Zhou J, Chen L | 2023 | Current Medical Science | Oncology | Multiplex IHC | HALO |
| Gastric tubular adenocarcinoma with diffuse neutrophils infiltrating: characteristics and probable treatment strategy | Wang B, Zhu Y, Wang S, Li Z, Wang L, Rao W, Cheng N, Chen R, Ying J, Xue L | 2023 | Gastric Cancer | Oncology | Multiplex IHC, Spatial Analysis, Registration | HALO |
| Modified Bushen Yiqi Formula mitigates pulmonary inflammation and airway remodeling by inhibiting neutrophils chemotaxis and IL17 signaling pathway in rats with COPD | Kong Q, Wang B, Zhong Y, Chen W, Sun J, Liu B, Dong J | 2023 | Journal of Ethnopharmacology | Multiplex IHC | HALO | |
| Lymphoid tissues contribute to plasma viral clonotypes early after antiretroviral therapy interruption in SIV-infected rhesus macaques | Solis-Leal A, Boby N, Mallick S, Cheng Y, Wu F, de la Torre G, Dufour J, Alvarez X, Shivanna V, Liu Y, Fennessey C M, Lifson J D, Li Q, Keele B F, and Ling B | 2023 | Science Translational Medicine | Infectious Disease | Multiplex IHC | HALO |
| Mutant p53 gains oncogenic functions through a chromosomal instability-induced cytosolic DNA response | Zhao M, Wang T, Gleber-Netto F O, Chen Z, McGrail D J, Gomez J A, Ju W, Gadhikar M A, Ma W, Shen L, Wang Q, Tang X, Pathak S, Raso M G, Burks J K, Lin S-Y, Wang J, Multani A S, Pickering C R, Chen J, Myers J N, Zhou G | 2024 | Nature Communications | Oncology | Classifier, Multiplex IHC | HALO |
| Neoadjuvant atezolizumab plus chemotherapy in gastric and gastroesophageal junction adenocarcinoma: the phase 2 PANDA trial | Verschoor YL, van de Haar J, van den Berg JG, van Sandick JW, Kodach LL, van Dieren JM, Balduzzi S, Grootscholten C, IJsselsteijn ME, Veenhof AAAF, Hartemink KJ, Vollebergh MA, Jurdi A, Sharma S, Spickard E, Owers EC, Bartels-Rutten A, den Hartog P, de Miranda NFCC, van Leerdam ME, Haanen JBAG, Schumacher TN, Voest EE, Chalabi M | 2024 | Nature Medicine | Immuno-oncology | Multiplex IHC | HALO |
| Stromal-derived MAOB promotes prostate cancer growth and progression | Pu T, Wang J, Wei J, Zeng A, Zhang J, Chen J, Yin L, Li J, Lin T, Melamed J, Corey E, Gao A, Wu B | 2024 | Science Advances | Oncology | Multiplex IHC, Highplex FL | HALO |
| HKDC1 promotes tumor immune evasion in hepatocellular carcinoma by coupling cytoskeleton to STAT1 activation and PD-L1 expression | Zhang Y, Wang M, Ye L, Shen S, Zhang Y, Qian X, Zhang T, Yuan M, Ye Z, Cai J, Meng X, Qiu S, Liu S, Liu R, Jia W, Yang X, Zhang H, Zhong X, Gao P | 2024 | Nature Communications | Oncology | Multiplex IHC | HALO |
| IGF2BP3 enhances lipid metabolism in cervical cancer by upregulating the expression of SCD | Han C, Hu C, Liu T, Sun Y, Hu F, He Y, Zhang J, Chen J, Ding J, Fan J, Zhang X, Wang J, Qiao X, Jiang D, Yang K, Yang S | 2024 | Cell Death & Disease | Oncology | Multiplex IHC | HALO |
| Impact of metronomic trabectedin combined with low-dose cyclophosphamide on sarcoma microenvironment and correlation with clinical outcome: results from the TARMIC study | Sun C-M, Toulmonde M, Spalato-Ceruso M, Peyraud F, Bessede A, Kind M, Cousin S, Buy X, Palussiere J, Bougouin A, Sautès-Fridman C, Fridman H W, Pulido M, Italiano A | 2024 | Molecular Cancer | Oncology | Multiplex IHC, Highplex FL | HALO |
| Selective CDK7 inhibition suppresses cell cycle progression and MYC signaling while enhancing apoptosis in therapy-resistant estrogen receptor positive breast cancer | Guarducci C, Nardone A, Russo D, Nagy Z, Heraud C, Grinshpun A, Zhang Q, Freelander A, Leventhal M J, Feit A, Feiglin A, Liu W, Hermida-Prado F, Kesten N, Ma W, De Angelis C, Morlando A, O'Donnell M, Naumenko S, Huang S, Nguyen Q, Huang Y, Malorni L, Bergholz J S, Zhao J J, Fraenkel E, Lim E, Schiff R, Shapiro G I, Jeselsohn R | 2024 | Clinical Cancer Research | Oncology | Multiplex IHC | HALO |
| Nanoparticle mediated photodynamic therapy as a method to ablate oral cavity squamous cell carcinoma in preclinical models | Sahovaler A, Valic M, Townson J, Chan H, Zheng M, Tzelnick S, Mondello T, Pener-Tessler A, Eu D, El-Sayes A, Ding L, Chen J, Douglas C, Weersink R, Muhanna N, Zheng G, Irish J | 2024 | Cancer Research | Oncology | Classifier, Multiplex IHC | HALO |
| Tertiary lymphoid structures predict survival and response to neoadjuvant therapy in locally advanced rectal cancer | Wang Q, Zhong W, Shen X, Hao Z, Wan M, Yang X, An R, Zhu H, Cai H, Li T, Lv Y, Dong X, Chen G, Liu A, Du J | 2024 | Precision Oncology | Oncology | Multiplex IHC | HALO |
| An immune cell map of human lung adenocarcinoma development reveals an anti-tumoral role of the Tfh-dependent tertiary lymphoid structure | Liu W, You W, Lan Z, Ren Y, Gao S, Li S, Chen W, Huang C, Zeng Y, Xiao N, Wang Z, Xie H, Ma H, Chen Y, Wang G, Chen C, Li H | 2024 | Cell Reports Medicine | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| A single nuclear transcriptomic characterisation of mechanisms responsible for impaired angiogenesis and blood-brain barrier function in Alzheimer’s disease | Tsartsalis S, Sleven H, Fancy N, Wessely F, Smith A M, Willumsen N, Cheung T K D, Rokicki M J, Chau V, Ifie E, Khozoie C, Ansorge O, Yang X, Jenkyns M H, Davey K, McGarry A, Muirhead R C J, Debette S, Jackson J S, Montagne A, Owen D R, Miners J S, Love S, Webber C, Cader M Z, Matthews P M | 2024 | Nature Communications | Neuroscience | Area Quantification, Multiplex IHC | HALO |
| Inhibition of IL-25/IL-17RA improves immune-related adverse events of checkpoint inhibitors and reveals antitumor activity | Hu X, Bukhari SM, Tymm C, Adam K, Lerrer S, Henick BS, Winchester RJ, Mor A | 2024 | Journal for ImmunoTherapy of Cancer | Immuno-oncology | Multiplex IHC | HALO |
| Oncogenic cell tagging and single-cell transcriptomics reveal cell type-specific and time-resolved responses to Vhl inactivation in the kidney | Kurlekar S, Lima J, Li R, Lombardi O, Masson N, Barros A, Pontecorvi V, Mole D, Pugh C, Adam J, Ratcliffe P | 2024 | Cancer Research | Oncology | Multiplex IHC | HALO, HALO AI |
| Characterisation of premature cell senescence in Alzheimer’s disease using single nuclear transcriptomics | Fancy N, Smith A, Caramello A, Tsartsalis S, Davey K, Muirhead R, McGarry A, Jenkyns M, Schneegans E, Chau V, Thomas M, Boulger S, Cheung T, Adair E, Papageorgopoulou M, Willumsen N, Khozoie C, Gomez-Nicola D, Jackson J S, Matthews P M | 2024 | Acta Neuropathologica | Neuroscience | Multiplex IHC | HALO |
| Preclinical efficacy and pharmacokinetics of an RNA-encoded T cell–engaging bispecific antibody targeting human claudin 6 | Stadler C, Ellinghaus U, Fischer L, Bähr-Mahmud H, Rao M, Lindemann C, Chaturvedi A, Scharf C, Biermann I, Hebich B, Malz A, Beresin G, Falck G, Häcker A, Houben A, Erdeljan M, Wolf K, Kullmann M, Chang P, Türeci Ö, Şahin U | 2024 | Science Translational Medicine | Immuno-oncology | Multiplex IHC | HALO |
| FLI1 promotes IFN-γ-induced kynurenine production to impair anti-tumor immunity | Chen E, Wu J, Huang J, Zhu W, Sun H, Wang X, Lin D, Li X, Shi D, Liu Z, Huang J, Chen M, Xie F, Deng W | 2024 | Nature Communications | Immuno-oncology | Multiplex IHC | HALO |
| Obesogenic High-Fat Diet and MYC Cooperate to Promote Lactate Accumulation and Tumor Microenvironment Remodeling in Prostate Cancer | Boufaied N, Chetta P, Hallal T, Cacciatore S, Lalli D, Luthold C, Homsy K, Imada E, Syamala S, Photopoulos C, Di Matteo A, de Polo A, Storaci A, Huang Y, Giunchi F, Sheridan P, Michelotti G, Nguyen Q, Zhao X, Liu Y, Davicioni E, Spratt D, Sabbioneda S, Maga G, Mucci L, Ghigna C, Marchionni L, Butler L, Ellis L, Bordeleau F, Loda M, Vaira V, Labbé D, Zadra G | 2024 | Cancer Research | Oncology | Classifier, Multiplex IHC | HALO |
| The m6A reader HNRNPC promotes glioma progression by enhancing the stability of IRAK1 mRNA through the MAPK pathway | Chen J, Lu T, Wang T, Yan W, Zhong F, Qu X, Gong X, Li J, Tou F, Jiang L, Han X | 2024 | Cell Death & Disease | Oncology | Multiplex IHC | HALO |
| Development of NR0B2 as a therapeutic target for the re-education of tumor associated myeloid cells | Vidana Gamage H E, Albright S T, Smith A J, Farmer R, Shahoei S H, Wang Y, Fink E C, Jacquin E, Weisser E, Bautista R O, Henn M A, Schane C P, Nelczyk A T, Ma L, Das Gupta A, Bendre S V, Nguyen T, Tiwari S, Krawczynska N, He S, Nelson E R | 2024 | Cancer Letters | Oncology | ISH, Multiplex IHC | HALO |
| A High Immune-Related Index with the Suppression of cGAS-STING Pathway is a Key Determinant to Herceptin Resistance in HER2+ Breast Cancer | Cai R, Chen Q, Zhao D, Wang Y, Zhou L, Zhang K, Shan J, Li Z, Chen Y, Zhang H, Feng G, Zhu X, Deng R, Tang J | 2024 | International Journal of Biological Sciences | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| Single-cell resolution characterization of myeloid-derived cell states with implication in cancer outcome | Rapozo Guimarães G, Resk Maklouf G, Teixeira C, Santos L, Tessarollo N, Toledo N, Serain A, Lanna C, Pretti M, Vieira da Cruz J, Falchetti M, Dimas M, Filgueiras I, Cabral-Marques O, Ramos R, Macedo F, Rodrigues F, Bastos N, Silva J, Rocha E, Chaves C, Melo A, Moraes-Vieira P, Mori M, Boroni M | 2024 | Nature Communications | Immuno-oncology | Multiplex IHC, TMA | HALO |
| MS-20 enhances the gut microbiota-associated antitumor effects of anti-PD1 antibody | Leea P-J, Hung C-M, Yang A-J, Hou C-Y, Chou H-W, Chang Y-C, Chua W-C, Huang W-Y, Kuo W-C, Yang C-C, Lind K-I, Hung K-H, Change L-C, Lee K-Y, Kuo H-P, Liu K-M, Lai H-C, Kuoi M-L, Chen W-J | 2024 | Gut Microbes | Immuno-oncology | Multiplex IHC | HALO |
| Metabolic imaging across scales reveals distinct prostate cancer phenotypes | Sushentsev N, Hamm G, Flint L, Birtles D, Zakirov A, Richings J, Ling S, Tan J Y, McLean M A, Ayyappan V, Menih I H, Brodie C, Miller J L, Mills I G, Gnanapragasam V J, Warren A Y, Barry S T, Goodwin R J A, Barrett T, Gallagher F A | 2024 | Nature Communications | Oncology | Area Quantification, FISH, Membrane, Multiplex IHC | HALO, HALO AI |
| PPARα affects hepatic lipid homeostasis by perturbing necroptosis signals in the intestinal epithelium"> | Na S, Fan Y, Chen H, Li L, Li G, Zhang F, Wang R, Yang Y, Shen Z, Peng Z, Wu Y, Zhu Y, Yang Z, Dong G, Ye Q, Yue J | 2024 | Acta Pharmaceutica Sinica B | Gastroenterology | Multiplex IHC | HALO |
| Citrullination modulation stabilizes HIF-1α to promote tumour progression | Chen R, Lin Z, Shen S, Zhu C, Yan K, Suo C, Liu R, Wei H, Gao L, Fan K, Zhang H, Sun L, Gao P | 2024 | Nature Communications | Oncology | Multiplex IHC | HALO |
| Neoadjuvant immune checkpoint blockade in women with mismatch repair deficient endometrial cancer: a phase I study | Eerkens A L, Brummel K, Vledder A, Paijens S T, Requesens M, Loiero D, van Rooij N, Plat A, Haan F J, Klok P, Yigit R, Roelofsen T, de Lange N M, Klomp R, Church D, ter Elst A, Wardenaar R, Spierings D, Foijer F, Koelzer V H, Bosse T, Bart J, Jalving M, Reyners A K L, de Bruyn M, Nijman H W | 2024 | Nature Communications | Immuno-oncology | Multiplex IHC | HALO, HALO AI |
| YTHDF2 in peritumoral hepatocytes mediates chemotherapy-induced antitumor immune responses through CX3CL1-mediated CD8+ T cell recruitment | Yang Z, Wang X, Fu Y, Wu W, Hu Z, Lin Q, Peng W, Pan Y, Wang J, Chen J, Hu D, Zhou Z, Xu L, Zhang Y, Hou J, Chen M | 2024 | Molecular Cancer | Immuno-oncology | Multiplex IHC | HALO |
| Angiotensin receptor blocker attacks armored and cold tumors and boosts immune checkpoint blockade | Mei J, Chu J, Yang K, Luo Z, Yang J, Xu J, Li Q, Zhang Y, Zhang Q, Wan M, Xue N, Ding J, Zhu Y, Cai Y, Yin Y | 2024 | Journal for Immunotherapy of Cancer | Immuno-oncology | Area Quantification, Multiplex IHC, Highplex FL | HALO |
| Intratumoral CXCL13+ CD160+ CD8+ T cells promote the formation of tertiary lymphoid structures to enhance the efficacy of immunotherapy in advanced gastric cancer | Wang J, Liang Y, Xue A, Xiao J, Zhao X, Cao S, Li P, Dong J, Li Y, Xu Z, Yang L | 2024 | Journal for Immunotherapy of Cancer | Immuno-oncology | Multiplex IHC, Highplex FL | HALO |
| Neoadjuvant nivolumab or nivolumab plus ipilimumab in early-stage triple-negative breast cancer: a phase 2 adaptive trial | Nederlof I, Isaeva O. I., de Graaf M, Gielen R. C. A. M., Bakker N. A. M., Rolfes A. L., Garner H, Boeckx B, Traets J. J. H., Mandjes I. A. M., de Maaker M, van Brussel T, Chelushkin M, Champanhet E, Lopez-Yurda M, van de Vijver K, van den Berg J. G., Hofland I, Klioueva N, Mann R. M., Loo C. E., van Duijnhoven F. H., Skinner V, Luykx S, Kerver E, Kalashnikova E, van Dongen M. G. J., Sonke G. S., Linn S. C., Blank C. U., de Visser K. E., Salgado R, Wessels L. F. A. W., Drukker C. A., Schumacher T. N., Horlings H. M., Lambrechts D, Kok M | 2024 | Nature Medicine | Immuno-oncology | Multiplex IHC, Spatial Analysis | HALO, HALO AI |
| PD-1 deficiency impairs eosinophil recruitment to tissue during Trichinella spiralis infection | Liu Y, Zhao S, Du S, Zhang Y, Yu Y, Zhan B, Hao J, Jia Z, Huang J, Guo Y, Zhang L, Zhu X, Cheng Y | 2024 | Cell Reports | Immuunology | Multiplex IHC | HALO, HALO AI |
| Single intravenous administration of oncolytic adenovirus TILT-123 results in systemic tumor transduction and immune response in patients with advanced solid tumors | Jirovec E, Quixabeira D C A, Clubb J H A, Pakola S A, Kudling T, Arias V, Haybout L, Jalkanen K, Alanko T, Monberg T, Khammari A, Dreno B, Svane I M, Block M S, Adamo D A, Mäenpää J, Kistler C, Sorsa S, Hemminki O, Kanerva A, Santos J M, Cervera-Carrascon V, Hemminki A | 2024 | Journal of Experimental & Clinical Cancer Research | Oncology | Multiplex IHC, Highplex FL | HALO |
| Human ITGAV variants are associated with immune dysregulation, brain abnormalities, and colitis | Ghasempour S, Warner N, Guan R, Rodari M M, Ivanochko D, Hawkins R W, Marwaha A, Nowak J K, Liang Y, Mulder D J, Stallard L, Li M, Yu D D, Pluthero F G, Batura V, Zhao M, Siddiqui I, Upton J E M, Hulst J M, Kahr W H A, Mendoza-Londono R, Charbit-Henrion F, Hoefsloot L H, Khiat A, Moreira D, Trindade E, Espinheira M do Céu, Pais I P, Weerts M J A, Douben H, Kotlarz D, Snapper S B, Klein C, Dowling J J, Julien J P, Joosten M, Cerf-Bensussan N, Freeman S A, Parlato M, van Ham T J, Muise A M | 2024 | Journal of Experimental Medicine | Other | Multiplex IHC | HALO |
| Conditional Activation of c-MYC in Distinct Catecholaminergic Cells Drives Development of Neuroblastoma or Somatostatinoma | Wang T, Liu L, Fang J, Jin H, Natarajan S, Sheppard H, Lu M, Turner G, Confer T, Johnson M, Steinberg J, Ha L, Yadak N, Jain R, Picketts D J, Ma X, Murphy A, Davidoff A M, Glazer E S, Easton J, Chen X, Wang R, Yang J | 2024 | Cancer Research | Oncology, Neuroscience | Multiplex IHC | HALO |
| Hepatocellular senescence induces multi-organ senescence and dysfunction via TGFβ | Kiourtis C, Terradas-Terradas M, Gee L M, May S, Georgakopoulou A, Collins A L, O’Sullivan E D, Baird D P, Hassan M, Shaw R, Tan E H, Müller M, Engelmann C, Andreola F, Hsieh Y C, Reed L H, Borthwick L A, Nixon C, Clark W, Hanson P S, Sumpton D, Mackay G, Suzuki T, Najumudeen A K, Inman G J, Campbell A, Barry S T, Quaglia A, Morris C M, LeBeau F E N, Sansom O J, Kirschner K, Jalan R, Oakley F, Bird T G | 2024 | Nature Cell Biology | Other | Area Quantification, Multiplex IHC, Highplex FL | HALO |
| Inhibition of lung tumorigenesis by transient reprogramming in cancer cells | Pedrosa P, Zhang Z, Nuñez-Quintela V, Macias D, Ge J, Denholm M, Dyas A, Estevez-Souto V, Lado-Fernandez P, Gonzalez P, Gomez M, Martin J E, Da Silva-Alvarez S, Collado M, Muñoz-Espín D | 2024 | Cell Death & Disease | Oncology | Multiplex IHC | HALO |
| SPHK1 promotes HNSCC immune evasion by regulating the MMP1-PD-L1 axis | Fang Q, Chen X, Cao F, Xu P, Zhao Z, Lin R, Wu D, Deng W, Liu X | 2024 | Theranostics | Immunology | Multiplex IHC | HALO |
| Durvalumab and tremelimumab in patients with advanced rare cancer: a multi-centre, non-blinded, open-label phase II basket trial | Gupta A, Tinker A, Jonker D, Jamal R, Hirte H, Winquist E W, Chug Q, Kollmannsberger C, Wong R, Alcindor T, Nielsen T O, Tsao M, Cottrell T R, Provencher D, Hilton J, Krzyżanowska M K, Elser C, Hotte S, Sederias J, Zhang S, Tu W, Dancey J | 2024 | eClinicalMedicine | Immuno-oncology | Multiplex IHC | HALO |
| Intestinal mucosal barrier repair and immune regulation with an AI-developed gut-restricted PHD inhibitor | Fu Y, Ding X, Zhang M, Feng C, Yan Z, Wang F, Xu J, Lin X, Ding X, Wang L, Fan Y, Li T, Yin Y, Liang X, Xu C, Chen S, Pulous F E, Gennert D, Pun F W, Kamya P, Ren F, Aliper A, Zhavoronkov A | 2024 | Nature Biotechnology | Gastroenterology | Multiplex IHC | HALO |
| Dementia with lewy bodies patients with high tau levels display unique proteome profiles | Greally S, Kumar M, Schlaffner C, van der Heijden H, Lawton ES, Biswas D, Berretta S, Steen H, Steen JA | 2024 | Molecular Neurodegeneration | Neuroscience | Area Quantification, Multiplex IHC | HALO, HALO AI |
| TFEB triggers a matrix degradation and invasion program in triple-negative breast cancer cells upon mTORC1 repression | Remy D, Antoine-Bally S, de Toqueville S, Jolly C, Macé A-S, Champenois G, Nemati F, Brito I, Raynal V, Priya A, Berlioz A, Dahmani A, Nicolas A, Meseure D, Marangoni E, Chavrier P | 2024 | Developmental Cell | Oncology | Multiplex IHC | HALO, HALO AI |
| Tumor-selective activity of RAS-GTP inhibition in pancreatic cancer | Wasko U N, Jiang J, Dalton T C, Curiel-Garcia A, Edwards A C, Wang Y, Lee B, Orlen M, Tian S, Stalnecker C A, Drizyte-Miller K, Menard M, Dilly J, Sastra S A, Palermo C F, Hasselluhn M C, Decker-Farrell A R, Chang S, Jiang L, Wei X, Yang Y C, Helland C, Courtney H, Gindin Y, Muonio K, Zhao R, Kemp S B, Clendenin C, Sor R, Vostrejs W P, Hibshman P S, Amparo A M, Hennessey C, Rees M G, Ronan M M, Roth J A, Brodbeck J, Tomassoni L, Bakir B, Socci N D, Herring L E, Barker N K, Wang J, Cleary J M, Wolpin B M, Chabot J A, Kluger M D, Manji G A, Tsai K Y, Sekulic M, Lagana S M, Califano A, Quintana E, Wang Z, Smith J A M, Holderfield M, Wildes D, Lowe S W, Badgley M A, Aguirre A J, Vonderheide R H, Stanger B Z, Baslan T, Der C J, Singh M, Olive K P | 2024 | Nature | Oncology | Multiplex IHC | HALO |
| Tumor resistance to anti-mesothelin CAR-T cells caused by binding to shed mesothelin is overcome by targeting a juxtamembrane epitope | Liu X.F, Onda M, Schlomer J, Bassel L, Kozlov S, Tai C.H, Zhou Q, Liu W, Tsao H.E, Hassan R, Ho M, Pastan I | 2024 | Proceedings of the National Academy of Sciences | Immuno-oncology | Multiplex IHC | HALO |
| Chimeric antigen receptor macrophages (CAR-M) sensitize HER2+ solid tumors to PD1 blockade in pre-clinical models | Pierini S, Gabbasov R, Oliveira-Nunes M C, Qureshi R, Worth A, Huang S, Nagar K, Griffin C, Lian L, Yashiro-Ohtani Y, Ross K, Sloas C, Ball M, Schott B, Sonawane P, Cornell L, Blumenthal D, Chhum S, Minutolo N, Ciccaglione K, Shaw L, Zentner I, Levitsky H, Shestova O, Gill S, Varghese B, Cushing D, DeLong S C, Abramson S, Condamine T, Klichinsky M | 2025 | Nature Communications | Immuno-oncology | ISH, Multiplex IHC | HALO |
| CD36 enrichment in HER2-positive mesenchymal stem cells drives therapy refractoriness in breast cancer | Castagnoli L, Franceschini A, Cancila V, Dugo M, Bigliardi M, Chiodoni C, Toneguzzo P, Regondi V, Corsetto P A, Pietrantonio F, Mazzucchelli S, Corsi F, Belfiore A, Vingiani A, Pruneri G, Ligorio F, Colombo M P, Tagliabue E, Tripodo C, Vernieri C, Triulzi T, Pupa S M | 2025 | Journal of Experimental & Clinical Cancer Research | Oncology | Multiplex IHC, Highplex FL | HALO, HALO AI |
| Cross-species comparisons between pigs and mice reveal conserved sex-specific intraspinal inflammatory responses after spinal cord injury | Kumari R, Hammers G V, Hammons R H, Stewart A N, MacLean S M, Niedzielko T, Schneider L E, Floyd C L, Gensel J C | 2025 | Journal of Neuroinflammation | Neuroscience | Area Quantification, Multiplex IHC | HALO |
| Stroma-derived Dickkopf-1 contributes to the suppression of NK cell cytotoxicity in breast cancer | Lee S, Ricci B, Tran J, Eul E, Ye J, Ren Q, Clever D, Wang J, Wong P, Haas M S, Stewart S A, Ma C X, Fehniger T A, Faccio R | 2025 | Nature Communications | Immuno-oncology | Multiplex IHC | HALO |
| Distinct immune cell infiltration patterns in pancreatic ductal adenocarcinoma (PDAC) exhibit divergent immune cell selection and immunosuppressive mechanisms | Sivakumar S, Jainarayanan A, Arbe-Barnes E, Sharma P K, Leathlobhair M N, Amin S, Reiss D J, Heij L, Hegde S, Magen A, Tucci F, Sun B, Wu S, Anand N M, Slawinski H, Revale S, Nassiri I, Webber J, Hoeltzel G D, Frampton A E, Wiltberger G, Neumann U, Charlton P, Spiers L, Elliott T, Wang M, Couto S, Lila T, Sivakumar P V, Ratushny A V, Middleton M R, Peppa D, Fairfax B, Merad M, Dustin M L, Abu-Shah E, Bashford-Rogers R | 2025 | Nature Communications | Immuno-oncology | Classifier, Multiplex IHC | HALO |
| A window-of-opportunity trial reveals mechanisms of response and resistance to navtemadlin in patients with recurrent glioblastoma | Rendo V, Lee E Q, Bossi C, Khuu N, Rudek M A, Pal S, Azazmeh N, Rashid R, Lin J R, Cusick M, Reynolds A R N, Fassinou A C R, Ayoub G, Malinowski S, Lapinskas E, Pisano W, Jeang J, Stopka S A, Regan M S, Spetz J, Desai A, Lieberman F, Palanichamy K, Fisher J D, Pelton K, Huang R Y, Sarosiek K A, Nabors L B, Holdhoff M, Danda N, Strowd R, Desideri S, Walbert T, Ye X, Chakravarti A, Sorger P K, Santagata S, Agar N Y R, Grossman S A, Alexander B M, Wen P Y, Ligon K L, Beroukhim R | 2025 | Science Translational Medicine | Oncology | Multiplex IHC | HALO |
| Prevention of tuberculosis in cynomolgus macaques by an attenuated Mycobacterium tuberculosis vaccine candidate | Singh D K, Ahmed M, Akter S, Shivanna V, Bucşan A N, Mishra A, Golden N A, Didier P J, Doyle L A, Hall-Ursone S, Roy C J, Arora G, Dick E J, Jagannath C, Mehra S, Khader S A, Kaushal D | 2025 | Nature Communications | Infectious Disease | Area Quantification, Multiplex IHC | HALO |
| Human-correlated genetic models identify precision therapy for liver cancer | Müller M, May S, Hall H, Kendall T J, McGarry L, Blukacz L, Nuciforo S, Georgakopoulou A, Jamieson T, Phinichkusolchit N, Dhayade S, Suzuki T, Huguet-Pradell J, Powley I R, Officer-Jones L, Pennie R L, Esteban-Fabró R, Gris-Oliver A, Pinyol R, Skalka G L, Leslie J, Hoare M, Sprangers J, Malviya G, Mackintosh A, Johnson E, McCain M, Halpin J, Kiourtis C, Nixon C, Clark G, Clark W, Shaw R, Hedley A, Drake T M, Tan E H, Neilson M, Murphy D J, Lewis D Y, Reeves H L, Le Quesne J, Mann D A, Carlin L M, Blyth K, Llovet J M, Heim M H, Sansom O J, Miller C J, Bird T G | 2025 | Nature | Oncology | Area Quantification, Multiplex IHC | HALO |
| Tebentafusp, a T cell engager, promotes macrophage reprogramming and in combination with IL-2 overcomes macrophage immunosuppression in cancer | Güç E, Treveil A, Leach E, Broomfield A, Camera A, Clubley J, Nieto Garcia P, Kazachenka A, Khanolkar R, del Carpio L, Heyn H, Hassel J C, Sacco J J, Stanhope S, Collins L, Piulats J M, Ranade K, Benlahrech A | 2025 | Nature Communications | Immuno-oncology | Multiplex IHC | HALO |
| Involvement of lncRNA MIR205HG in idiopathic pulmonary fibrosis and IL-33 regulation via Alu elements | Takashima T, Zeng C, Murakami E, Fujiwara N, Kohara M, Nagata H, Feng Z, Sugai A, Harada Y, Ichijo R, Okuzaki D, Nojima S, Matsui T, Shintani Y, Kawai G, Hamada M, Hirose T, Nakatani K, Morii E | 2025 | JCI Insight | Fibrosis | ISH, Multiplex IHC | HALO |
| Potential pulmonary toxicity risks of metal products from hip implants: Using A549 lung cell and animal model | Konety R, Kanniyappan H, Walkay T, Jacob A, Barba M, Deaton R, Mathew MT | 2025 | Chemical Engineering Journal | Other | Multiplex IHC | HALO |
| A positron emission tomography tracer for the imaging of oxidative stress in the central nervous system | Wilde J H, Sun Y-Y, Simpson S R, Hill E R, Fu Z, Bian E J, Kinkaid M M, Villanueva P, Weybright A F, Terrell W R, Qureshi Z, Perera S S, Sheppard H S, Stone J R, Kundu B K, Kuan C-Y, Neumann K D | 2025 | Nature Biomedical Engineering | Neuroscience | Multiplex IHC | HALO |
| PARP inhibitor radiosensitization enhances anti-PD-L1 immunotherapy through stabilizing chemokine mRNA in small cell lung cancer | Ran X, Wu X, Vidhyasagar V, Song L, Zhang X, Ladak R, Teng M, Ba-alawi W, Philip V, He H, Sonenberg N, Lok B H | 2025 | Nature Communications | Immuno-oncology | Multiplex IHC | HALO |
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