Getting Started with In Situ Hybridization in HALO®
22 May 2025 | Learn the basics of in situ hybridization image analysis!
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FISH
Interactive Markup Images: Providing a Dynamic Look at HALO® Analysis Results
At Indica Labs, our HALO platforms are optimized for ease-of-use as well as powerful, accurate analysis, and include multiple features to help users get the most from their data.
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Indica Labs and Molecular Instruments Announce Partnership to Advance AI-Powered Quantitative Image Analysis with HCR™ RNA-ISH
Albuquerque, NM, and Los Angeles, CA – 5 April 2024 – Indica Labs, a leading provider of AI-powered digital pathology solutions, and Molecular Instruments® (MI), the inventor of the HCR™ Imaging technology, announce a new partnership to co-market compatibility between MI’s patented HCR™ Imaging technology and Indica’s HALO® software.
Announcing HALO® RNAscope™ modules supporting interactive markups
In this blog post, you can learn about the interactive markup image support added to the HALO® ISH, FISH, ISH-IHC, and FISH-IF modules, where to find the user guides, tutorial videos, and when to expect to upgrade.
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Hedgehog Signaling pathway in Thymic Differentiation – An in situ Single Cell Resolution Investigation
1 February 2024 | Please join us for this 1-hour webinar to Learn about applications of the ACD RNAscope™ HiPlex assay .
A role for HALO® in characterizing cell heterogeneity across organ systems: from the liver to the brain
12 October 2023 | Please join us for this 1-hour webinar to learn about characterizing cell heterogeneity with HALO to gain new biological insights.
Getting Started with RNAscope™ Image Analysis in HALO®
28 March 2023 | Join us for this 1-hour webinar to see a live demonstration of RNAscope image analysis using the HALO® platform from Indica Labs. This webinar will demonstrate the basic functionality of HALO’s RNAscope modules for analysis of brightfield and fluorescence images and will discuss available analysis outputs. In addition, select HALO modules that are commonly used with RNAscope image analysis will be demonstrated, and a brief introduction to how HALO AI can advance your RNAscope will be provided. Get started today with RNAscope image analysis in HALO!
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Masterclass Webinar: Optimizing RNAscope Image Analysis
05 May 2022 | In this 60-min webinar, Dr. Ghislaine Lioux will present solutions to common RNAscope image analysis challenges including how to optimize color deconvolution, nuclear segmentation, and how to manage spot clusters
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Whole-slide Quantitative RNAscope Image Analysis: Applications and Methods
20 April 2022 | In this 2-hour event, learn from three experts in RNAscope image analysis with HALO® as they present their scientific research, share RNAscope tips and tricks, and participate in a panel discussion.
Whole-slide Quantitative RNAscope Image Analysis: Applications and Methods Read More »
RNAscope common questions, troubleshooting, and tips and tricks
When performing RNAscope image analysis, you can set yourself up for success with a combination of thoughtful experimental design, rigorous assay execution and validation. At Indica Labs, the most common challenges we see in RNAscope image analysis include chromogenic staining that has saturated to black, which causes color deconvolution challenges, loss of nuclear morphology due to over-digestion of tissue, and failing to verify and validate an image analysis solution before scaling up.
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